SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25669

Length: 1078 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25669

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S1 RNA-binding domain-containing protein; K02945 small subunit ribosomal protein S1	-	-	2.0e-37	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG1

Fln msg: your sequence is shorter than subject: 206 - 425

Fln protein: LVTRIEGLRAFLPKTELVNKPYDNFSALKINVGRQINVLIIRVDEENGELIISEREAWDMKYLHEGTLLEGSIRRIFSYGAEVRVDGTSISGLLHISQISRARVPSVKELFSEGEKVKVMVVHSMFTNRISFSTAGLECEEGLILFNKQRVFDEAEQMAAAYRQKLNPLRGMNRRESFLDDVDMFRDGAECYANWSCLQFEPERE*

Protein Length: 207

Fln nts: GGCTTGTCACAAGGATTGAGGGCTTAAGGGCCTTTCTTCCCAAAACAGAGCTGGTGAACAAGCCTTATGATAATTTTTCAGCCTTAAAAATTAATGTTGGGAGACAGATAAATGTACTGATTATTAGAGTCGATGAAGAAAATGGCGAGCTAATAATCAGTGAAAGGGAAGCTTGGGATATGAAATATCTCCATGAAGGAACACTACTCGAAGGGTCCATAAGAAGGATATTTTCATATGGGGCAGAAGTGAGGGTTGATGGAACAAGCATAAGTGGATTGCTTCATATTTCACAGATATCTCGTGCTCGAGTTCCATCTGTTAAGGAGTTGTTTTCAGAGGGTGAAAAGGTCAAAGTTATGGTGGTTCACTCCATGTTCACAAATAGAATTTCTTTCAGCACGGCAGGCTTGGAGTGCGAGGAAGGATTGATTCTCTTCAATAAACAGAGAGTGTTTGATGAAGCAGAGCAGATGGCAGCAGCATATAGGCAGAAATTGAATCCTCTGCGGGGTATGAATAGAAGAGAATCATTTCTGGATGATGTGGACATGTTTCGTGATGGAGCGGAATGTTATGCAAACTGGAGCTGTCTTCAATTTGAGCCAGAACGGGAATAA___TGAATATTGGACCAGCAAATGATGTAATTGCATCAACTGTATAAGTATTATTAAGTTGTGTAGTCCAGTTAATGGTTAACCACTGCAATTTCGTTTTTATCCACATGATAAGAGATCAGGGACGTGTATCAATGTATGGATTAATAAGCGGGAGGCAAGGGAGAAAAGCCTATATTCCATTATGGTGAAATTAATAGGTATGTTTATGACGTATACATCAAAAATCGTGAAGTGCCCAGGTTTGTTCTGGTTGCTTTTTTTGTATTGAAGATGCATATCTGCTTAATGAGTAAATTTTCGAAGTTAAGCAAGCACCTTGATGATTTCAGGGCATTGGCACCATTATATGGGGAAATGTGTATACTTCATCCATTGATAAAATGCAAGGGCTTTATAAATTTCTGATATATGTATGAGAGTTATCATTGTTGTGAAGATAAAAAGCGGTACAATTTGAT

Fln Alignment:

sp_v1.1_unigene25669___IEGLRAFLPKTELVNKPYDNFSALKINVGRQINVLIIRVDEENGELIISEREAW--DMKYLHEGTLLEGSIRRIFSYGAEVRVDGTSISGLLHISQISRARVPSVKELFSEGEKVKVMVV-HSMFTNRISFSTAGLECEEGLILFNKQRVFDEAEQMAAAYRQKLNPLRGMNRRE
A9NYG1_______________VECLRGFVPFSQISTKI--NIEEL---VNKEIPLKFMEVDEEQTRLVLSNRKAMADSQAQLGIGSVVLGTVQTIKPYGAFVDLGG--INGLLHVSQISHDRVADVGTILQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMLRNPTLVYEKADEMAQTFRQRIAQAEAMARAD

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
283			25	75	0.996473
287			25	75	0.996473
288	50			50	1.0
289			25	75	0.996473
290	25			75	0.996473
291		25		75	0.996473
293	75			25	0.996473
294		75		25	0.996473
295	75		25		0.996473
297	75	25			0.996473
299	75		25		0.996473
302	25			75	0.996473
304			75	25	0.996473
305		25		75	0.996473
306	25		75		0.996473
713		42	57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain