SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25659

Length: 1298 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene25659 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone clpb, putative n=1 Tax=Ricinus communis RepID=B9SJA7_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	90%
Blast2go	response to heat	GO:0009408	Biological Process	90%
Blast2go	binding	GO:0005488	Molecular Function	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Chaperonin ClpA/B	IPR001270	-	90%
Blast2go	AAA+ ATPase domain	IPR003593	-	90%
Blast2go	ATPase, AAA-2	IPR013093	-	90%
Blast2go	Clp ATPase, C-terminal	IPR019489	-	90%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8K5

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is longer than subject: 416 - 292

Fln protein: MTHIQSIKEEIDRVNLEIQQAERDYDLNRAAELKYGSLMSLQKQLEGAEKELDEYQHSGKSMLREEVTGNDIAEIVSKWTGIPISKLQQSEKEKLLKLDVELHKRVIGQDPAVKSVAEAIQRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTESIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEVAQTTFRPEFMNRIDEYIVFQPLDREQIKSIVRLQLDRVQQRLRDRKITLKVTDSLVELLGSMGYDPNYGARPVKRVIQQHVENELAKEILRGDIKEEDTVLVDTEMTAFANGQLPHQKLVFKVFPSKTAV

Protein Length: 417

Fln nts: GCAAAGGCAGCAAGAGCTTACACAACAATGGGAACATGAAAAGGCTGTA_-_ATGACACACATTCAATCCATCAAGGAAGAGATTGATAGGGTAAATCTGGAAATACAACAAGCGGAGCGTGACTATGATCTGAACAGAGCAGCTGAATTGAAGTATGGAAGTCTTATGTCATTACAAAAGCAACTTGAGGGTGCTGAAAAGGAGTTGGATGAGTATCAGCATAGTGGGAAATCAATGTTAAGGGAAGAGGTAACTGGGAATGATATTGCTGAAATAGTCAGCAAATGGACCGGTATTCCCATATCCAAACTTCAGCAGTCTGAGAAAGAGAAGCTTTTGAAGTTGGATGTAGAATTGCATAAGCGTGTCATTGGTCAAGATCCAGCTGTGAAATCTGTAGCTGAAGCCATCCAGCGATCTAGGGCGGGTCTCTCAGATCCTAATCGTCCTATTGCAAGCTTCATGTTTATGGGCCCAACAGGTGTTGGCAAAACAGAATTAGCTAAGGCTCTTGCATCCTATTTATTTAATACTGATGAAGCTCTAGTGAGGATTGACATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGGCTGATTGGAGCACCACCAGGGTATGTGGGTTATGAAGAAGGGGGACAGTTGACTGAGTCTATACGTAGAAGGCCTTATGCAGTTATTCTGTTTGATGAAATTGAGAAGGCACATACAGATGCCTTCAATATTCTACTTCAGATTTTAGATGACGGAAGGGTCACTGATTCTCAGGGTCGAACTGTAAGCTTCACCAACACTGTCATTATTATGACTTCAAACATTGGTTCTCAGTACATTCTAAGTAGGCTTGATGATGAACCTGGCTCAAAAGAGGAACTGTATGAGAGAATGAAGAACAGGGTTATGGAAGTGGCTCAAACGACATTCCGCCCTGAGTTCATGAATCGCATTGATGAGTATATTGTTTTCCAACCTCTAGACCGTGAACAAATTAAGAGCATTGTAAGATTACAGCTGGATCGTGTTCAACAAAGGTTAAGAGACAGGAAAATCACCCTTAAAGTGACTGATAGTTTAGTGGAACTATTAGGTAGTATGGGTTATGATCCAAATTATGGTGCAAGGCCAGTGAAAAGAGTAATTCAGCAGCATGTAGAAAATGAACTAGCGAAGGAAATCCTCAGGGGTGATATCAAGGAAGAGGATACGGTTCTTGTGGATACAGAAATGACTGCATTTGCTAATGGTCAACTGCCCCATCAAAAGCTTGTTTTCAAGGTGTTTCCCTCAAAAACTGCAGTAG

Fln Alignment:

sp_v1.1_unigene25659___MFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTESIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEVAQTTFRPEFMNRIDEYIVFQPLDREQIKSIXXXXXXXXXXXXXXRKITLKVTDSLVELLGSMGYDPNYGARPVKRVIQQHVENELAKEILRGDIKEEDTVLVDTEMTAFANGQLPHQKLVFKVFPSKTA
D5A8K5_______________MFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTECIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEAAQMTFRPEFMNRIDEYIVFQPLDREQINSIVRLQLDRVQQRLRDRKITLKVTDSGVELLGSMGYDPNYGARPVKRVIQQHVENELAKEILRGDIKEEDTVLVDTEMTTFANGQLPYQKLVFKVFPSKTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain