SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25651

Length: 2999 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25651
CAGTATATCTGTTATAGTATTTTGGTGGGAATAGGAGTGGGATTGTGAGTTGAGAGGTATTTTTTTTGTTGGGTTGTGTGTCGATCAGAATGATAAAGGCCGGGGATCTGTATAATGTGCTCGTGGCAGTGGTTCCACTGTACGTGGCTATGATATTGGCCTACGGTTCTGTGAAATGGTGGAAGATCTTCACGCCGGATCAGTGCTCGGGGATCAATCGCTTCGTTGCCATATTCGCGGTGCCGTTGCTCTCTTTTCATTTTATTTCCACCAATAACCCATACACCATGAACTTCAAGTTCATAGCTGCAGACACGCTGCAGAAGCTGATAATGCTGGTGGTGCTGGGGCTGTGGACCAACTTCACCAGGAGCGGGAGCACCGAGTGGATGATCACGATTTTCTCGGTGTCCACGTTGCCCAACACGCTGGTGATGGGAATACCGTTGCTCAAGGCCATGTATGGAGAGTTCTCGGGGAACTTGATGGTGCAGGTCGTGGTTCTGCAGTGCATAATATGGTATACGTTGCTCTTGTTTCTTTTCGAGTACCGTGGCGCCAAGATGCTCATCATGGAGCAGTTTCCAGACACCGCGGCCTCCATCGTTTCCTTCAAGGTGGACTCCGATGTTGTGTCGCTGGACGGGCGGGAGCTCCTCCAGACGGACGCGGAGGTTGGAGACGATGGGAAGCTCCACGTGACCGTGCGGAAGTCGACGTCGTCCAGGTCTGTGATATCGAGTCGGAGATCCATGGGGTTGGGCTCGTTGCCTTCCATGACACCCAGGCCTTCGAATCTGACTGGAGCCGAGATCTATTCCTTGAATCCAACTCCCCGGGGATCGAACTTCAACCATTCAGATTTCTATTCGATGATGGCAGGGCGCGGAATGAGCCCTCGCCAGTCTAATTTTGGGCCCTCTGATGCTTATTCCCTGCAATCCTCTCGAGGGCCTACGCCCCGGCCTTCCAACTTCGATGATGAGAATACCAGGGACTTTAAATCCGGGATTAATAACAATCCCGTTGCTCCTGCGAATGCTATGATGAATTCTCCCAGGTTCGGACCCCCTTTGTATCCTCCTGGTCACATGCACCCATATGCCCACAGAACCCAGCAACAGCAGCAGCAGCCTGGACTGGAGCCAGCCAGTAATGCTGCGACTAATGTTGCTGGGTATCCAGCTCCTAATCCTGATGTTTTGTCTACAAATTCCTCCTCCAGGCCAGTCCCTGTTGCCAAAAGGAACATGGCTTCTGATCCAATTAGGTCCCCACAACAAACCAAGGGCCAGCATGATGCAAAAGAGCTGCATATGTTTGTGTGGAGTTCGAGCACTTCTCCTGTTTCTGAGGGAGGGCTTCATGTCTTTGGTGGAGCCGAGTTTGCTGACCCGGGAAGAACTGCAGCAACTGATCATAATGCGAAGGAGATCAGAATGCTGGTTTCACCAACAGCTGATCATGCCACCAATGGTGGTGGAACCAAAGGCTTGCCAGAACTTCGCCATGACCAACAGCCTTATGAAGAATATGTCCGGGAAGATTTCAGCTTTGGCAACAGGGCTATGTCCCAGGGGAATGAATCAATCCCTCTCGACAAGGAAGGTCCCAGCCTTTCTAAATTCGGATCCAGCTCCACTGCAGAGCTACACCCAAAAAGCCATGACGATAAACATAAACAGATGCCCCCGGCAAGTGTCATGACCAGGCTTATTCTCATCATGGTCTCGACGAAACTCATTAGAAATCACAACACGTATTCCAGCCTAATAGGCCTTATATGGGCACTCGTTTCTTTCAGGTGGCATGTTAATATGCCGAGAATTGTGGCGGAATCAATAGCAATCCTGTCTAATGCAGGTCTCGGCATGGCCATGTTTAGTTTGGGTCTGTTCATGGCTTTGCAACCAAGGATCATAGCATGTGGAAATTCTGTTGCAGCGTTTGCGATGGCTGTTAGATTTCTTACAGGACCAGCTGTGATGGCAGCAGCCTCTATTGCGGTTGGTCTGAGGGGGAAGTTACTTCACGTGGCCATTGTACAGGCAGCTCTTCCTCAAGGCATTGTTCCATTTGTCTTTGCAAAAGAGTACAATGTACATCCAGATATATTGAGCACAGCAGTTATTTTTGGTATGTTGATAGCGTTACCAATAACGTTGGTGTACTACATTGTGTTGGGCCTCTGAAAGGCCAATGAATATCAATGGCTATTGGATGGTGATACAAGTTGGTGTATATGCATGCTTCCCTAAATTTCTTTAACCTTCAAACACACTGTAATACAGCACTCACAGTGGAGCTCTACTGTGTCAGCACCTAGATGCATGCATTGGATGAGCAGCTGTTGTCAGCTTTCTGTACTGTCTAGTGCAAATGACTTGTGGGAAGCTGAGCAGCAAGCAAATGGTCTGACACAGACTGAGAAGGGCTTGCTTCTAGTCTGAAAGTAAAGTGGATCTCTGAGAGGACAGATAGATGCAGCTTTGTATTTCTAGACACTGTTAGAGTCTGTGGCAGTCATTACAGTTTTCTGAAGAAATGGGTTGCAGTGTCCAATACACCGACCCCAAAATCTCATAAGTAGTTTGTAGTTTATTTGCAACTTGTTATTTAATATACTGACTGTGAATGGCCCCCTCGCTTGTGCCAGTTTTGTGGTTGATATGGAACAATTATAGCTTTGGCTGCAATCGAAAGACAGATTGATTGTATTCCAGAGCTAAAGCGAATGCCAAATTAATGACCCAAATTAACCAATGATCGCTTGCTTTGATTGATGATGCCTTTGGGTTTATTTGAGCTCCTACAAGAAGAGGAGCAGGCCTCAGTTTTGGCCAAAGCTAAATATAATGTACCTGCTTTTCACCTTGATACTTCAGCACTTGCTTTTCGCTGCCAAGGGGCAACATATTTTGTAATATTTTTATCTGAGCATGTGGAATCTAATGGAGCCCAAAAATGTTTTCAGTAATTTATTTATCTCAAGAGTGCTC

Ace file of the UniGene sp_v1.1_unigene25651

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PIN-like auxin efflux carrier n=1 Tax=Picea abies RepID=B5TXD0_PICAB	-	-	91%
FL-Next	tr=PIN-like auxin efflux carrier; Picea abies (Norway spruce) (Picea excelsa).	-	-	96%
Blast2go	auxin efflux carrier component	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	73%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	73%
Blast2go	auxin polar transport	GO:0009926	Biological Process	73%
Blast2go	tropism	GO:0009606	Biological Process	73%
Blast2go	root hair initiation	GO:0048766	Biological Process	73%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	73%
Blast2go	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	73%
Blast2go	lateral plasma membrane	GO:0016328	Cellular Component	73%
Blast2go	cell surface	GO:0009986	Cellular Component	73%
Blast2go	vesicle membrane	GO:0012506	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B5TXD0

Fln msg:

Fln protein: MIKAGDLYNVLVAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVAIFAVPLLSFHFISTNNPYTMNFKFIAADTLQKLIMLVVLGLWTNFTRSGSTEWMITIFSVSTLPNTLVMGIPLLKAMYGEFSGNLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPDTAASIVSFKVDSDVVSLDGRELLQTDAEVGDDGKLHVTVRKSTSSRSVISSRRSMGLGSLPSMTPRPSNLTGAEIYSLNPTPRGSNFNHSDFYSMMAGRGMSPRQSNFGPSDAYSLQSSRGPTPRPSNFDDENTRDFKSGINNNPVAPANAMMNSPRFGPPLYPPGHMHPYAHRTQQQQQQPGLEPASNAATNVAGYPAPNPDVLSTNSSSRPVPVAKRNMASDPIRSPQQTKGQHDAKELHMFVWSSSTSPVSEGGLHVFGGAEFADPGRTAATDHNAKEIRMLVSPTADHATNGGGTKGLPELRHDQQPYEEYVREDFSFGNRAMSQGNESIPLDKEGPSLSKFGSSSTAELHPKSHDDKHKQMPPASVMTRLILIMVSTKLIRNHNTYSSLIGLIWALVSFRWHVNMPRIVAESIAILSNAGLGMAMFSLGLFMALQPRIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGKLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYIVLGL*

Protein Length: 702

Fln nts: CAGTATATCTGTTATAGTATTTTGGTGGGAATAGGAGTGGGATTGTGAGTTGAGAGGTATTTTTTTTGTTGGGTTGTGTGTCGATCAGA_-_ATGATAAAGGCCGGGGATCTGTATAATGTGCTCGTGGCAGTGGTTCCACTGTACGTGGCTATGATATTGGCCTACGGTTCTGTGAAATGGTGGAAGATCTTCACGCCGGATCAGTGCTCGGGGATCAATCGCTTCGTTGCCATATTCGCGGTGCCGTTGCTCTCTTTTCATTTTATTTCCACCAATAACCCATACACCATGAACTTCAAGTTCATAGCTGCAGACACGCTGCAGAAGCTGATAATGCTGGTGGTGCTGGGGCTGTGGACCAACTTCACCAGGAGCGGGAGCACCGAGTGGATGATCACGATTTTCTCGGTGTCCACGTTGCCCAACACGCTGGTGATGGGAATACCGTTGCTCAAGGCCATGTATGGAGAGTTCTCGGGGAACTTGATGGTGCAGGTCGTGGTTCTGCAGTGCATAATATGGTATACGTTGCTCTTGTTTCTTTTCGAGTACCGTGGCGCCAAGATGCTCATCATGGAGCAGTTTCCAGACACCGCGGCCTCCATCGTTTCCTTCAAGGTGGACTCCGATGTTGTGTCGCTGGACGGGCGGGAGCTCCTCCAGACGGACGCGGAGGTTGGAGACGATGGGAAGCTCCACGTGACCGTGCGGAAGTCGACGTCGTCCAGGTCTGTGATATCGAGTCGGAGATCCATGGGGTTGGGCTCGTTGCCTTCCATGACACCCAGGCCTTCGAATCTGACTGGAGCCGAGATCTATTCCTTGAATCCAACTCCCCGGGGATCGAACTTCAACCATTCAGATTTCTATTCGATGATGGCAGGGCGCGGAATGAGCCCTCGCCAGTCTAATTTTGGGCCCTCTGATGCTTATTCCCTGCAATCCTCTCGAGGGCCTACGCCCCGGCCTTCCAACTTCGATGATGAGAATACCAGGGACTTTAAATCCGGGATTAATAACAATCCCGTTGCTCCTGCGAATGCTATGATGAATTCTCCCAGGTTCGGACCCCCTTTGTATCCTCCTGGTCACATGCACCCATATGCCCACAGAACCCAGCAACAGCAGCAGCAGCCTGGACTGGAGCCAGCCAGTAATGCTGCGACTAATGTTGCTGGGTATCCAGCTCCTAATCCTGATGTTTTGTCTACAAATTCCTCCTCCAGGCCAGTCCCTGTTGCCAAAAGGAACATGGCTTCTGATCCAATTAGGTCCCCACAACAAACCAAGGGCCAGCATGATGCAAAAGAGCTGCATATGTTTGTGTGGAGTTCGAGCACTTCTCCTGTTTCTGAGGGAGGGCTTCATGTCTTTGGTGGAGCCGAGTTTGCTGACCCGGGAAGAACTGCAGCAACTGATCATAATGCGAAGGAGATCAGAATGCTGGTTTCACCAACAGCTGATCATGCCACCAATGGTGGTGGAACCAAAGGCTTGCCAGAACTTCGCCATGACCAACAGCCTTATGAAGAATATGTCCGGGAAGATTTCAGCTTTGGCAACAGGGCTATGTCCCAGGGGAATGAATCAATCCCTCTCGACAAGGAAGGTCCCAGCCTTTCTAAATTCGGATCCAGCTCCACTGCAGAGCTACACCCAAAAAGCCATGACGATAAACATAAACAGATGCCCCCGGCAAGTGTCATGACCAGGCTTATTCTCATCATGGTCTCGACGAAACTCATTAGAAATCACAACACGTATTCCAGCCTAATAGGCCTTATATGGGCACTCGTTTCTTTCAGGTGGCATGTTAATATGCCGAGAATTGTGGCGGAATCAATAGCAATCCTGTCTAATGCAGGTCTCGGCATGGCCATGTTTAGTTTGGGTCTGTTCATGGCTTTGCAACCAAGGATCATAGCATGTGGAAATTCTGTTGCAGCGTTTGCGATGGCTGTTAGATTTCTTACAGGACCAGCTGTGATGGCAGCAGCCTCTATTGCGGTTGGTCTGAGGGGGAAGTTACTTCACGTGGCCATTGTACAGGCAGCTCTTCCTCAAGGCATTGTTCCATTTGTCTTTGCAAAAGAGTACAATGTACATCCAGATATATTGAGCACAGCAGTTATTTTTGGTATGTTGATAGCGTTACCAATAACGTTGGTGTACTACATTGTGTTGGGCCTCTGA___AAGGCCAATGAATATCAATGGCTATTGGATGGTGATACAAGTTGGTGTATATGCATGCTTCCCTAAATTTCTTTAACCTTCAAACACACTGTAATACAGCACTCACAGTGGAGCTCTACTGTGTCAGCACCTAGATGCATGCATTGGATGAGCAGCTGTTGTCAGCTTTCTGTACTGTCTAGTGCAAATGACTTGTGGGAAGCTGAGCAGCAAGCAAATGGTCTGACACAGACTGAGAAGGGCTTGCTTCTAGTCTGAAAGTAAAGTGGATCTCTGAGAGGACAGATAGATGCAGCTTTGTATTTCTAGACACTGTTAGAGTCTGTGGCAGTCATTACAGTTTTCTGAAGAAATGGGTTGCAGTGTCCAATACACCGACCCCAAAATCTCATAAGTAGTTTGTAGTTTATTTGCAACTTGTTATTTAATATACTGACTGTGAATGGCCCCCTCGCTTGTGCCAGTTTTGTGGTTGATATGGAACAATTATAGCTTTGGCTGCAATCGAAAGACAGATTGATTGTATTCCAGAGCTAAAGCGAATGCCAAATTAATGACCCAAATTAACCAATGATCGCTTGCTTTGATTGATGATGCCTTTGGGTTTATTTGAGCTCCTACAAGAAGAGGAGCAGGCCTCAGTTTTGGCCAAAGCTAAATATAATGTACCTGCTTTTCACCTTGATACTTCAGCACTTGCTTTTCGCTGCCAAGGGGCAACATATTTTGTAATATTTTTATCTGAGCATGTGGAATCTAATGGAGCCCAAAAATGTTTTCAGTAATTTATTTATCTCAAGAGTGCTC

Fln Alignment:

sp_v1.1_unigene25651___MIKAGDLYNVLVAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVAIFAVPLLSFHFISTNNPYTMNFKFIAADTLQKLIMLVVLGLWTNFTRSGSTEWMITIFSVSTLPNTLVMGIPLLKAMYGEFSGNLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPDTAASIVSFKVDSDVVSLDGRELLQTDAEVGDDGKLHXXXXXXXXXXXXXXXXXXMGLGSLPSMTPRPSNLTGAEIYSLNPTPRGSNFNHSDFYSMMAGRGMSPRQSNFGPSDAYSLQSSRGPTPRPSNFDDENTRDFKSGIXXXXXXXXXXXXXSPRFGPPLYPPGHMHPYAHRTXXXXXXPGLEPASNAATNVAGYPAPNPDVLSTNSSSRPVPVAKRNMASDPIRSPQQTKGQHDAKELHMFVWSSSTSPVSEGGLHVFGGAEFADPGRTAATDHNAKEIRMLVSPTADHATNGGGTKGLPELRHDQQPYEEYVREDFSFGNRAMSQGNESIPLDKEGPSLSKFGSSSTAELHPKSHDDKHKQMPPASVMTRLILIMVSTKLIRNHNTYSSLIGLIWALVSFRWHVNMPRIVAESIAILSNAGLGMAMFSLGLFMALQPRIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGKLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYIVLGL
B5TXD0_______________MIKAGDLYNVLVAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVAIFAVPLLSFHFISSNDPYTMNFKFIAADTLQKLIMLVVLGLWTNFTRSGSPEWMITIFSVSTLPNTLVMGIPLLKAMYGNFSGNLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPDTAASIVSFKVDSDVVSLDGRELLQTDAEIGDDGKLHVTVRKSTSSRSVISSRRSMGLGSLPSMTPRPSNLTGAEIYSLNPTPRGSNFNHSDFYSMMAGRGMSPRQSNFGPSDAYSLQSSRGPTPRPSNFDDENTRDFKSGINNNPVAPANAMMNSPRFGPPLYPPGHMHPYAHRPQQQQPQPGLEPASNAANNVAGYPAPNPDVLSTNSSSRP-PAAKRNMASDPIRSPQQAKGQHDAKELHMFVWSSSASPVSEGGLHVFGGAEFADPGRTAATDHNAKEIRMLVSPTADHATNGGVAKGLPELRHDQQPYEEYAREDFSFGNRAMSQGNESIPLDKEGPSLSKFGSSSTAELHPKSHDEKHKQMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVSFRWNVHMPRIVAHSIAILSDAGLGMAMFSLGLFMALQPRIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYVVLGL

SNPs (tot: 88)

Position	A %	C %	G %	T %	Probability
246			16	83	0.994512
276	66		33		1.0
488		11	88		0.923564
491		11	88		0.923564
492		87	12		0.992554
493	87			12	0.992554
495	12		87		0.992554
496		12		87	0.992554
498			87	12	0.992554
505		12		87	0.992554
506			87	12	0.992554
589	66		33		1.0
636		12		87	0.992554
646			88	11	0.923564
650			88	11	0.923564
653		11	88		0.923564
656		88		11	0.923564
657		88	11		0.923564
658			11	88	0.923564
660		88		11	0.923564
663	88			11	0.923564
667	77		22		0.999999
669	12		75	12	0.975346
676		11		88	0.923564
677			11	88	0.923564
678		11	88		0.923564
680	88			11	0.923564
684		11	88		0.923564
685	88			11	0.923564
689		12	87		0.992554
690	87			12	0.992554
691	87		12		0.992554
692			87	12	0.992554
694	12			87	0.992554
698		87		12	0.992554
702	87		12		0.992554
1164	80			20	1.0
1168	80		20		1.0
1170		20		80	1.0
1171		20	80		1.0
1176			11	88	0.999952
1177			88	11	0.999952
1178		11	70	17	1.0
1179		17	82		1.0
1180	17			82	1.0
1181	70	17	11		1.0
1182	11			88	0.999952
1184	17	82			1.0
1185	88			11	0.999952
1189		88	11		0.999952
1190		88		11	0.999952
1191		11		88	0.999952
1193	88	11			0.999952
1196	11	88			0.999952
1301	85			14	0.999981
1470	41	58			1.0
2332		87	12		0.992554
2469			26	73	1.0
2470			73	26	1.0
2471	73	26			1.0
2473	75			25	1.0
2478	73	26			1.0
2479			73	26	1.0
2482	73		26		1.0
2484	73	26			1.0
2490		26	73		1.0
2572			88	11	0.999937
2573	88			11	0.999952
2574		89	10		0.999919
2575		78	21		1.0
2576		89		10	0.999919
2577		89		10	0.999919
2578	78		21		1.0
2579	78			21	1.0
2580	78	10	10		0.999769
2582		10		78	0.999769
2585		89		10	0.999919
2586	89		10		0.999919
2587			10	84	0.999846
2588	89	10			0.999919
2589	89			10	0.999919
2592	89	10			0.999919
2593	10		89		0.999919
2594		10		89	0.999919
2596		10		89	0.999919
2597	10		89		0.999919
2907	81	18			0.999994
2976	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1122	1134	CAG CAG CAG CAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain