SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25641

Length: 538 nt

UniGene Fasta

>sp_v1.1_unigene25641
TACCCAGGGGTGCCTTCGACCCACTGGGGTTGGCCGACGACCCTGAGGCGTTCGCGGAGCTGAAGGTAAAGGAGATTAAGAACGGGCGATGGCCATGTTCTTCGGCTTCTTCGTGCAGGCGATCGTGACCGGGAAGGGCCCCATTGAAAATCTCTACGACCACTTGGCGGACCCCACTGCCAACAATGCCTGGGCCTATGCCACCAATTTCGTTCCCGGCAAATGAAGTAAAGCGACGGAAAATAAAAGATGGCCGTAATCTGTGTATCATACATCTGACAGACTTTCTTGTTGATAAGCCAATTTTCTTTCAAACAGATGTTACTCGATTTCCTGTTAAGTTCCTGCATCGGTTTTTTTTCTGGTTCACGGTTGCTTTCTTTTCGCTTGTAATCTTAACTGCGATTGGCCTTTCAGTTACGTACTCTTCTCTTTTAGATATAGATGACGTAACACCGTAGTCTGTCCTCGGATTGAGGCTATTGTATCCTTTGATCTTGTTCAAAAAAAGGTAAAGTACTAAGTGTTGTGTGTAGCT

Ace file of the UniGene sp_v1.1_unigene25641

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chlorophyll a-b binding protein 151, chloroplastic n=13 Tax=Magnoliophyta RepID=CB21_GOSHI	-	-	3.0e-28	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	chlorophyll a b binding protein	-	-	2.00106e-29	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPD6

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 75 - 266

Fln protein: PRGAFDPLGLADDPEAFAELKVKEIKNxxxAMFFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK*

Protein Length: 76

Fln nts: TACCCAGGGGTGCCTTCGACCCACTGGGGTTGGCCGACGACCCTGAGGCGTTCGCGGAGCTGAAGGTAAAGGAGATTAAGAACxxxxxxxxxGCCATGTTCTTCGGCTTCTTCGTGCAGGCGATCGTGACCGGGAAGGGCCCCATTGAAAATCTCTACGACCACTTGGCGGACCCCACTGCCAACAATGCCTGGGCCTATGCCACCAATTTCGTTCCCGGCAAATGAAGTAAAGCGACGGAAAATAAAAGATGGCCGTAATCTGTGTATCATACATCTGACAGACTTTCTTGTTGATAAGCCAATTTTCTTTCAAACAGATGTTACTCGATTTCCTGTTAAGTTCCTGCATCGGTTTTTTTTCTGGTTCACGGTTGCTTTCTTTTCGCTTGTAATCTTAACTGCGATTGGCCTTTCAGTTACGTACTCTTCTCTTTTAGATATAGATGACGTAACACCGTAGTCTGTCCTCGGATTGAGGCTATTGTATCCTTTGATCTTGTTCAAAAAAAGGTAAAGTACTAAGTGTTGTGTGTAGCT

Fln Alignment:

sp_v1.1_unigene25641___PRGAFDPLGLADDPEAFAELKVKEIKNGRxAMAMFFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK
A9NPD6_______________PGGAFDPLGLADDPESFAELKVKEIKNGRxAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain