SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25617

Length: 1332 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25617

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	USP family protein n=3 Tax=Andropogoneae RepID=B6TYX3_MAIZE	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	universal stress protein 1	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Universal stress protein A	IPR006015	-	81%
Blast2go	UspA	IPR006016	-	81%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPB4

Fln msg:

Fln protein: MPGDRNIGVAVDYSASSKFALKWALDNLADKGDRVVVIHVNQNKAPESGQSQLWEQSGSPLIPLSEFRVANMSKQYDLNPDAETLDLLDTASRQKELEVIAKVYWGDAREKLCEAVEDLKLDSLVMGSRGLGQLKRVFLGSVSNYVISNANCPVTVVKEPGFKP*

Protein Length: 166

Fln nts: ATGGGGGAGAACCCACGGTAAAATGCGAAGCGGTGTCTGCTCCTTGGCGCACAGATGACAACAGCATTTAACCCCAGAGAGGAGCTCATTTAAACGCAGAGAGGAGGAACAAGCGAGTAAAGTGAAACTCATAACAGCCGGATCTCAACGCAACGCAAG_-_ATGCCTGGCGATCGAAATATTGGAGTTGCAGTGGACTACTCAGCCTCAAGCAAATTTGCCCTCAAATGGGCTCTGGATAATCTGGCAGACAAGGGAGATCGAGTCGTGGTTATTCATGTCAATCAAAACAAAGCGCCGGAGAGCGGACAGAGTCAACTCTGGGAGCAGTCCGGATCACCTCTGATTCCTTTATCCGAGTTCAGAGTAGCCAATATGTCTAAGCAGTATGACCTCAATCCGGATGCTGAGACTCTGGATTTGCTGGACACTGCGTCAAGGCAAAAGGAGCTAGAAGTAATAGCCAAGGTTTATTGGGGTGATGCGAGGGAGAAGTTATGCGAGGCAGTTGAGGACCTTAAGCTTGATAGCTTGGTGATGGGCAGCAGAGGCCTTGGGCAGCTGAAAAGGGTTTTCCTCGGAAGTGTGAGTAATTATGTTATAAGCAACGCAAACTGCCCTGTGACTGTTGTAAAGGAACCTGGATTCAAACCATGA___AGATAATCAGTGCTTCATATATATATAAATAAAAAACAAAGAAACCTTTTGGTTTATTATGTCCGTAAGGCACTGGGATTTGAACATTACCTATGCCCTTTTGATTTACGAATTGTAATTTGTAAGGTTGGGACAGATATGGTCAATAAGTGATGACAACGCTGTATTCCTGGAAAGTTCATCGCTGTTTGTAGTTTTTATATATTTTGGTATCTCCGCCGCAGCCAGACTAGTTTTTATATTTTGGCCAGAGCTTATTTGTGTTATTAGCTGATTTGATTTCTTGTGACTAGTTTGGCTGAAGTTCCTTTTGCAACAGTGTTTTGGCGCTTATTGGTTAAACTTATTTATTGGTATTAATATATTTATCTCAGAGGTCAGTCAAGGTGCTTAGGAGGACCCCTTATTACCATGTAAGAGAAGGCTCCATAGATGCATTTTAAGAGTAAGAAGAAATGATGGAAAAGATCCAAAAATGATGCTATGTTCTTGACGAAATGATCTCCACCAAAGAAATATAGTTAACCATATGTTCAGATGCCATATTGAAACACATCTTGAAATGGTAATAATGGAAAGATGAGATATGCATACTAGACAGAGAACTGTTCCATTCTTTGTGGGAGAAAGAATGGGTACTTGCATCGTTTTTCAATATTAGGATCATTCTCTTGTTTC

Fln Alignment:

sp_v1.1_unigene25617___MPGDRNIGVAVDYSASSKFALKWALDNLADKGDRVVVIHVNQNKAPESGQSQLWEQSGSPLIPLSEFRVANMSKQYDLNPDAETLDLLDTASRQKELEVIAKVYWGDAREKLCEAVEDLKLDSLVMGSRGLGQLKRVFLGSVSNYVISNANCPVTVVKEPGFKP
A9NPB4_______________MPGDRSIGIAVDYSPSSKSALKWALDNLADKGDRVVVIHINQNKEPESGQSQLWDKAGSPLIPLAEFREGNLSKHYELNPDAEVLDMLDTAARQKELEVIAKVYWGDAREKLCDAVEDLKLDSLVMGSRGLGQLKRVFLGSVSNYVISNANCPVTVVKEPGFKP

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
428		90		10	0.90298
429			10	90	0.90298
435	10		90		0.90298
506	12			87	0.992554
509	87		12		0.992554
680			12	87	0.992554
682	71	28			1.0
683	61		30		1.0
685	63	36			1.0
686	54		36		1.0
687	63			36	1.0
688	63		36		1.0
690	54	36			1.0
692	63			36	1.0
693	63			36	1.0
694	60		40		1.0
696	60	40			1.0
697	60			40	1.0
698	60		40		1.0
699		80		20	0.999996
700	20	70			0.999998
701	20	30		50	1.0
702		20		80	0.999996
703		20		80	0.999996
704	20	20		50	0.999999
705	20		80		0.999996
873		87		12	0.992554
876		87		12	0.992554
877	87		12		0.992554
878	12		87		0.992554
881	87			12	0.992554
883	87		12		0.992554
889		20		80	0.995493
890	20			80	0.995493
891		20		80	0.995493
893	80	20			0.995493
894	25			75	0.996473
950		10		90	0.90298
952			90	10	0.90298
957	90	10			0.90298
958		10	90		0.90298
962		90	10		0.90298
963		10		90	0.90298
965			10	90	0.90298
970	90	10			0.90298
1060	93		6		0.999364
1061			10	90	1.0
1062			6	93	0.999364
1066	93			6	0.999453
1068	7		92		0.999602
1070	92			7	0.999664
1072		7	84		0.99801
1073	92	7			0.999664
1074	12		88		1.0
1084			38	61	1.0
1086			90	9	0.999872
1096	88		11		0.999937
1140	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain