SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25547

Length: 1429 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25547

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE	-	-	4.2039e-45	49%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	36%
Blast2go	gag-pol polyprotein	-	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 109 aas, putative chimeric sequence, your sequence is shorter than subject: 52 - 542

Fln protein: PYSS*PFLGVGPVARFMQNPRESHWKAAKRILRYVEVQFSLGFITVPEQLY*

Protein Length: 53

Fln nts: ACCCATACTCGTCCTGACCTTTCCTTGGTGTTGGTCCTGTTGCTCGGTTTATGCAAAACCCCCGTGAAAGTCATTGGAAAGCAGCTAAAAGAATACTTCGTTATGTTGAGGTACAGTTCAGTTTGGGATTCATTACAGTGCCAGAGCAGCTCTATTAG___TTGGTTTCACTGATTCTGATTGGGCTGGTGACCCTGATGATCGGAAGTCTACTGCCGGTTATGTCTTCACTCTTGGTTCAGGACCTATTACATGGGCTTGTAAGAAACAGGCTGCCATTTCTCTTTCGTCAGCAGAAGCAGAGTATCGTGGTGCCGTGGAAGCTAGTAAGGAAGCCTTGTGGCTTCGTCAGATCCTATCAGAGTTTGGCTTTGAGCAGCGTCATCCGACTACACTTTGGTGTGATAATCAAAGTGCCATTCAGCTATGCAAAGATCCAGTCCAACATCAGCGCAGAAAACACATTGAACTACACATGCAATTCATCAGAAAGCTCATTCATGACCATGTTCTTGAAGTGCAATATTGTTCAACAGATGATCAGGTTGCAGACATCTTCACAAAGGCTCTCACAGAGGCGAAGTTCACTAAACTTCGATTTATGCTTGGAGTTCAGGAAGTTGTCACTAAGGGGGGATAGGCTCTAGTGCCTCCTTCCTTCTCCTATTGTGTCATATTTGTAAATCCTTCAATCCTATCCCAAGTTGTTCTTAAGGGGGGATGTTAGGATATTCCGACACATAGGAAATAGTTAAGTATAACTTGGTCTAGTATAGAGTTAGGTAAAGTGTGTTTCTTTACTATGTACATTTTGTAACTTACAATCCGACGGTCACGATATGTAGTGATCCGACGGTTCATTCTCTCCTCGGTATTACCGACACTTGATCCGTGGCTTAACACCCGATTGGTCCATGATCTCTATTTAAAGAGCATGGAGGGTCATTTGTAGGGTAATCCGTCTATGAGAGAAGCTTATGTAAATTTTCATTCTTTTATTAATAAATTGCCTGAAGTGGCCGCGTTGGCTTAGGCCGTGGACTGTTTCCCTCTTTGAGGGTTTTAACCACGTCAAAATACTGGTGTATTGATCTGTGATCTGGTTGTGAGCGGTGTCCTTTGGTGTTCTATCTGAGGAACTTACCCTGTAAATTCCTACATGGTATCAGGGCTATTTGAGGGTCGCGTTTGTTGGTGATCCAAATCTGAAGCCGGTAGAACTGCATCCGACTGTCGTTTCCTAGATCTACTGTTTCTGACTACCTTCGGGCCGAGAGGACTGCTTTATTGTGTTGGAAGTATCTGTTCTAGTGAAGAAACCCTTTCGTTTCACGCAAAAAGGTTTCTGGTAGCCCTAGCTGCATCATTTTTAAGATCTGGAGGTATACAGTGTTTATTTGCAGTTTACAGTTATTTTCTCTCTATTTCCCAT

Fln Alignment:

sp_v1.1_unigene25547___VGPVARFMQNPRESHWKAAKRILRYVEVQFSLG
Q9M5J7_______________VGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYG

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
645	33		66		0.997452
824		80		20	0.995493
825		80		20	0.995493
826	20		80		0.995493
830	20		80		0.995493
834		80		20	0.995493
835	40		60		1.0
838	80		20		0.995493
841		25		75	0.996473
848		75		25	0.996473
850	25		75		0.996473
852		75		25	0.996473
853	25		75		0.996473
863		75	25		0.996473
869	25		75		0.996473
878		75		25	0.996473
885	25			75	0.996473
891		75		25	0.996473
894			75	25	0.996473
906	25		75		0.996473
912		25		75	0.996473
916	25			75	0.996473
931	25		75		0.996473
933	25		75		0.996473
946		33		66	1.0
948			33	66	1.0
949			66	33	1.0
960		83		16	0.994512
963		80		20	0.995493
964		20		80	0.995493
969			80	20	0.995493
976	80			20	0.995493
991	50			50	1.0
993	25	75			0.996473
1022	50		50		1.0
1023		50		50	1.0
1034	50		50		1.0
1037	25		75		0.996473
1040	25		75		0.996473
1042		75		25	0.996473
1058		25	75		0.996473
1059	25		50	25	1.0
1066	80		20		0.995493
1070		80		20	0.995493
1081		80		20	0.995493
1104			80	20	0.995493
1107			80	20	0.995493
1112	20	80			0.995493
1119	20	80			0.995493
1123	20		80		0.995493
1129		80		20	0.995493
1131	40		60		1.0
1133	20	80			0.995493
1135	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain