SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25515

Length: 1796 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25515

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldose 1-epimerase (EC:5.1.3.3); K01785 aldose 1-epimerase [EC:5.1.3.3]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	aldose 1-epimerase family protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aldose 1-epimerase.	EC:5.1.3.3	-	0.0	57%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010		0.0	57%
AutoFact	Biosynthesis of secondary metabolites	01110		0.0	57%

Source	InterPros	Term	Type	Identity
Blast2go	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	73%
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	73%
Blast2go	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	73%
Blast2go	Aldose 1-epimerase	IPR015443	-	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN86

Fln msg: W1: There is no M at the beginning,

Fln protein: PFSLVSLHAKKGKDSLSKSKPGIFELHRGKLQIRFTNWGATILSVKVPDAKGKVADVVLGFDTLTPYMNGTSPYFGAIVGRVANRIKDGEFTLDGKTYHLPKNDGNNTLHGGKRGFDKVLWRVQRLKKGPRPSIQFTYHSRDGEQGFPGVLDVSATYTLSGPRELTLEIKALPRTKATPVSLAQHTYWNLAGEASNRSILSNKVTIWAHSITPVDKHLIPTGAIVPVKGTPYDFTKPTAVGKRINDVPGGYDINYVLDRPESKHRLRRAVRVKDDFSGRVLDLWTNNIGLQFYSSNQIKKIVGKGGAIYRKYAGLALETQAFPDAVDQPSFPSIIYRPGQIYRHVMVYKFSVEK*

Protein Length: 356

Fln nts: ATGGGGGAGCAAGCACATGTCCTTGACTAATGCAATGCAATGCGCTCCGGTAATACCGATCACCAATGCAGGAATTACTCGGTTGAAATGGTTGGGATATGCAATCCACGTTTCACAAATCGCATGCCTGTAAATGCGGATGGTTTTGTCAGTTTCTGTAATCTTGAGTTTTTTCAATGGATCTGTATGTTTAGAATCTGGATAGAATAGTGAGTAGGCACCTACTTATCTGGTGCACCTATTTAAGGATCTGGTGGCAACAAATACATCCAACATTCTATCTTCATAGTTACAGTAAGCAGTCGAATAGGGTCCTGTTCGGTTTGCATTGGCAGGGTTTTGATGATTATGGGGACTTTGAGTGGCAATCTCTGGTTGTTTGCTCTGATAGCCTTTCTCACTTGTCTCTCTGCATGCCAAGAAGGGTAAAGACTCGTTGTCGAAAAGTAAACCTGGCATATTTGAGCTACACAGGGGAAAATTGCAGATCAGGTTTACCAACTGGGGAGCCACCATATTGTCTGTGAAAGTACCGGATGCCAAAGGTAAAGTAGCAGATGTGGTTCTGGGCTTTGATACTCTCACTCCATACATGAATGGCACTTCCCCTTACTTTGGTGCCATTGTGGGGCGCGTGGCCAACAGAATCAAGGATGGAGAATTCACATTAGATGGCAAAACATATCATCTCCCTAAAAATGATGGGAACAATACACTCCATGGAGGAAAAAGGGGATTCGACAAGGTATTATGGAGGGTACAGAGACTGAAAAAGGGGCCTCGTCCATCTATACAGTTTACTTACCACAGTCGTGACGGTGAACAAGGATTTCCTGGTGTTCTTGATGTATCTGCAACATACACTCTGAGTGGACCTAGGGAGTTGACACTTGAAATAAAAGCATTACCAAGGACAAAGGCTACTCCTGTGAGCTTAGCCCAACATACCTACTGGAACCTTGCAGGGGAAGCCAGTAACCGAAGCATACTTAGCAATAAAGTGACAATATGGGCACATTCAATTACTCCAGTGGACAAACACCTCATTCCCACTGGTGCTATTGTGCCTGTCAAAGGAACTCCCTATGATTTTACAAAACCAACTGCTGTTGGAAAAAGAATAAACGATGTCCCAGGAGGGTATGATATAAACTATGTCCTGGATCGGCCGGAGTCGAAGCATCGGCTGAGGCGTGCTGTGAGAGTGAAGGACGATTTCAGTGGAAGGGTTTTGGATTTGTGGACAAATAACATAGGCTTGCAGTTTTATAGTTCTAATCAAATCAAGAAAATTGTGGGGAAGGGAGGTGCCATTTACAGGAAATATGCAGGCCTGGCCTTGGAGACTCAGGCTTTCCCGGATGCAGTGGACCAGCCGAGTTTTCCATCTATTATTTATCGTCCAGGGCAGATCTACCGTCATGTTATGGTTTACAAGTTTTCGGTGGAGAAGTAG___TTCATCGAATCACAGATGAAGACTTTTGGAGAAGTAGCCCTGTATCCTTGAAAAGCAGGGACTCTGAAAGGTCAAAATTTTCTTATCAGAACTATTAAATAATTTGGTGGGTGTATTCCATTGTTGTCCTCAACATTGTCAGATCCATTAAATAATCAGGATAACAAATAGCCATTTATTATTTTAACAAATTCTTTTCAACACTTCCAGAGAAATTGATTGTGTATTCCATCGTTCTTCTCAAACTTGTCAGGATTCATTGAATGAACTATTTGGGTGTAAGTTCTGTAAGTTTTGTATATTAATCTTGAGAAAGCTAAGTCCCACTTCTATTGATCGG

Fln Alignment:

sp_v1.1_unigene25515___KPGIFELHRGKLQIRFTNWGATILSVKVPDAKGKVADVVLGFDTLTPYMNGTSPYFGAIVGRVANRIKDGEFTLDGKTYHLPKNDGNNTLHGGKRGFDKVLWRVQRLKKGPRPSIQFTYHSRDGEQGFPGVLDVSATYTLSGPRELTLEIKALPRTKATPVSLAQHTYWNLAGEASNRSILSNKVTIWAHSITPVDKHLIPTGAIVPVKGTPYDFTKPTAVGKRINDVPGGYDINYVLDRPESKHRLRRAVRVKDDFSGRVLDLWTNNIGLQFYSSNQIKKIVGKGGAIYRKYAGLALETQAFPDAVDQPSFPSIIYRPGQIYRHVMVYKFSV
A9NN86_______________EPQVFELKKGDLQLKVTNWGATITSLQVPDANGNLADVVLGFDSLTPYMDGSSLYFGCIVGRVANRIKNGGFTLSGQHYSLPINNGPNTLHGGKIGFDKVVWKVEERKDGENPSVKFSYHSHDGEQGFPGDLDVSATYTLSGNLELRLDMEAVPRNKPTPVSLAQHTYWNLAGHNSG-DILDHSVQIWGSHVTPVDENLIPTGELLPIKGTPFDFTNEKIVGSTINEVPGGYDHNFVLDCGESMDGLKHAIKVEDPSSSRVLDLWTNAPGMQFYTGNFLDGVVGKGGAVYGKHAGLCLETQGFPNAVNQANFPSIIVSPGEVYRHTMVYKFSV

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
142		20	80		0.995493
145		40		60	1.0
146			20	80	0.995493
147	33			66	1.0
149	33		33	33	0.997753
151	33	33		33	0.997753
152			66	33	0.997452
154		33	33	33	0.997753
155	33		33	33	0.997753
158		33	66		0.997452
159	33			66	0.997452
161	42	57			1.0
162	42	14	42		1.0
165			42	57	1.0
171		42		57	1.0
172		42		57	1.0
175			42	57	1.0
176			42	57	1.0
182			42	57	1.0
183	42	57			1.0
184	42			57	1.0
187		25	75		1.0
188	18			75	1.0
221		89		10	0.999919
251	84	15			1.0
450	66			33	0.997452
453	33	33			0.997753
455	66	33			0.997452
457		66		33	0.997452
459	33			66	0.997452
476	66		33		0.997452
477		66		33	0.997452
499		25	75		0.996473
500			25	75	0.996473
502		25		75	0.996473
503	75		25		0.996473
504		75		25	0.996473
505		75	25		0.996473
507	66	33			0.997452
510			66	33	0.997452
513		33	66		0.997452
514	66			33	0.997452
516		66		33	0.997452
569		50	50		1.0
570			50	50	1.0
573			50	50	1.0
574			50	50	1.0
576	50		50		1.0
578		50		50	1.0
584	50		50		1.0
589		50	50		1.0
614		83		16	0.994512
786			84	15	0.999986
1154	89		10		0.999919
1156	89		10		0.999919
1159	89	10			0.999919
1160	89			10	0.999919
1340			94	6	0.999998
1342		94	6		0.999998
1345	6		94		0.999998
1352	94			6	0.999998
1359			95	4	0.995055
1575		5	89		0.979359
1743			40	60	1.0
1776			50	50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
29	43	AATGC AATGC AATGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain