SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25481

Length: 2090 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene25481
ATGGGCAGTGACTCGTGGCACATCGTACAAGTTTGCCCTACTGAATTAGTCTAAAATAACGTCATTGTGGGAGATTTCACATAACTCTTCCTTGGAGAATCCAATTTGGATCAGACTGGTGGCATTGGAAAGAGAACACAGAAGTCTACTACAGGTCGCAATTTCAGAACTTAAATATCAGAAATTACAGAGTTACAGTCGTCTCAAGATTGAGGTCCTAAAATCAAGAAAAGCAAGATGAGGAAGTTTGATGGCAAGGATCCGGTAAATTGGATACTTCAGATGGAGCAATATTTTGATCTACATGGTGTACAACTATTACAAAAGGTATGTATTGCATCTTCATATTTAGAACCAGATCAATTTTTATGGTATAAAGGGCTTTGTTCTCGTAAAAAACTTGTTACGTGGTCAATTCTCACGGAGGAAATGATAGCACATTATGAGGATACAAAGAGCAACACCTTCTTTAGAGCAACACCACAACAATTGGAAAGAGTAAAAGGGCTTTGTGACATAGTGGAAAGTAAAATTATGGAAACAAGGAAGTCTACCCCTCACAACTATAAAGATGGAAGTGTTGTTTCTCCTAGCCTTCCACAACCTACAAGGGTTACGCCACAACAATTGGAAGAAAAAAGAGAAAAAGGGCTTTGTTACAATTGTGATAGCAAATGCACTAAAGGTCATAAGTGTGCTGAGAAGAAATTATTTTACATAGAATATGAAGAGGAGGAAGAAAAGGATCAAGAAACATCAAAAGAAGAAGATATACACCAGGACCCCACCCCAGAGAAAGAAGAAATGAATCAGACCATATCTTGTAAAGCATTGGCAAGAATTACCACTCCTCAAACTCTCAAGATAGAAGGACATATCAAGAAGAAAAAGGTGCAAGAAGTGAAAGATCACACCGAGAAAGAAGAAATGAATCCAACCATATCTTGTAATTCATTGGTCAAAATTACTACTCCTCAAACTATCAAGATAGAAGGACATATCAAAAAGAAAAATGTTCAAGAAGTGAAATATCACATCGAGCATCAAGAAATGAATCCGACCATATCTTGTAAAGGATTGGAAGAAATTACCACTCCTCAAACTCTAGAGATAGAAGGACATATCAAGAAGAAAAAGGTTCAAGCAGTGAAAGATCACATCAAGCATCAACAACAAGTTCTCCAAATTTTAAAGGATAACGACACTTCAATGCAAAATCAAATGAAACAACAGGTAGATCAACATCGTAGTGAAAAATGTTTTGATTGGGTATTTTTACTGCTACATCTCAAGCAAGCTATTTATGAGAAGGAAATGTTGGCAATACTACATGCACTTAAAAAATGGCGACCTTACCGAATGGGAAGACTCTTCAAGGATGAGGATATCAAAGCATTGTTTTGTGCTATTTCTATTATCCAACCAGATTGGATAAAAGAAGCAAAGGATAAATGGAAGAAGGACGAAGAAGTATGGCCACTTATTCAAAAGTTGCAAAAGATCCCAATTCAAACAATATTGCCAGAAATTGAAGAGGAAGGAAAAATCATATTGGAACCTGGAGCAGTCACAGAAACAAGAACCCGACAGCTACGAAATCGATCAATTTCAGAGTATCTCATCAAGTGGAAGAACTTACCCGCTGAAGATTCCACATGGGAGGACAAGAATTTTATACAGAAGCATCAAGAACTACTCAAGCGTTGAGGACAACACTTTTTGAAGGAGAGGGGCATGTTAGGTCCCTATACTACTAGTGTAACCCCTTATTGTTATTAGTACAACCCCCTTATTATATTGTTGTGCCCATGTAGTCCCCATATTGTTATTATTGTGCCCCATAGAAGCCCACTATTGTTATTATTGTGCCCTTACATTATTATGTTATGTCGGCTCTGATTATATTATGACTCTTTAGACTCCTATATATAGAAAGGAGGTCTTGTCATTTGTATCATCCAAGAATTGTTCATTTGTGTAATGTAAAGGAGGTTGCCCCTCGAAGAGGCTGATCTCTAAGGCGTAGATCTATCTTTTCTATCTTTTTGTGAGCTGGTTCCATAACATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene25481

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromo multi-domain protein	-	-	6.0e-08	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	28%
Blast2go	hypothetical protein VITISV_025787 [Vitis vinifera]	-	-	1.79376e-14	45%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chromo domain/shadow	IPR000953	-	1.79376e-14	45%
Blast2go	Chromo domain-like	IPR016197	-	1.79376e-14	45%
Blast2go	Chromo domain	IPR023780	-	1.79376e-14	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A5AT89

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 57 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 490 - 569

Fln protein: MRKFDGKDPVNWILQMEQYFDLHGVQLLQKVCIASSYLEPDQFLWYKGLCSRKKLVTWSILTEEMIAHYEDTKSNTFFRATPQQLERVKGLCDIVESKIMETRKSTPHNYKDGSVVSPSLPQPTRVTPQQLEEKREKGLCYNCDSKCTKGHKCAEKKLFYIEYEEEEEKDQETSKEEDIHQDPTPEKEEMNQTISCKALARITTPQTLKIEGHIKKKKVQEVKDHTEKEEMNPTISCNSLVKITTPQTIKIEGHIKKKNVQEVKYHIEHQEMNPTISCKGLEEITTPQTLEIEGHIKKKKVQAVKDHIKHQQQVLQILKDNDTSMQNQMKQQVDQHRSEKCFDWVFLLLHLKQAIYEKEMLAILHALKKWRPYRMGRLFKDEDIKALFCAISIIQPDWIKEAKDKWKKDEEVWPLIQKLQKIPIQTILPEIEEEGKIILEPGAVTETRTRQLRNRSISEYLIKWKNLPAEDSTWEDKNFIQKHQELLKR*

Protein Length: 491

Fln nts: ATGGGCAGTGACTCGTGGCACATCGTACAAGTTTGCCCTACTGAATTAGTCTAAAATAACGTCATTGTGGGAGATTTCACATAACTCTTCCTTGGAGAATCCAATTTGGATCAGACTGGTGGCATTGGAAAGAGAACACAGAAGTCTACTACAGGTCGCAATTTCAGAACTTAAATATCAGAAATTACAGAGTTACAGTCGTCTCAAGATTGAGGTCCTAAAATCAAGAAAAGCAAG_-_ATGAGGAAGTTTGATGGCAAGGATCCGGTAAATTGGATACTTCAGATGGAGCAATATTTTGATCTACATGGTGTACAACTATTACAAAAGGTATGTATTGCATCTTCATATTTAGAACCAGATCAATTTTTATGGTATAAAGGGCTTTGTTCTCGTAAAAAACTTGTTACGTGGTCAATTCTCACGGAGGAAATGATAGCACATTATGAGGATACAAAGAGCAACACCTTCTTTAGAGCAACACCACAACAATTGGAAAGAGTAAAAGGGCTTTGTGACATAGTGGAAAGTAAAATTATGGAAACAAGGAAGTCTACCCCTCACAACTATAAAGATGGAAGTGTTGTTTCTCCTAGCCTTCCACAACCTACAAGGGTTACGCCACAACAATTGGAAGAAAAAAGAGAAAAAGGGCTTTGTTACAATTGTGATAGCAAATGCACTAAAGGTCATAAGTGTGCTGAGAAGAAATTATTTTACATAGAATATGAAGAGGAGGAAGAAAAGGATCAAGAAACATCAAAAGAAGAAGATATACACCAGGACCCCACCCCAGAGAAAGAAGAAATGAATCAGACCATATCTTGTAAAGCATTGGCAAGAATTACCACTCCTCAAACTCTCAAGATAGAAGGACATATCAAGAAGAAAAAGGTGCAAGAAGTGAAAGATCACACCGAGAAAGAAGAAATGAATCCAACCATATCTTGTAATTCATTGGTCAAAATTACTACTCCTCAAACTATCAAGATAGAAGGACATATCAAAAAGAAAAATGTTCAAGAAGTGAAATATCACATCGAGCATCAAGAAATGAATCCGACCATATCTTGTAAAGGATTGGAAGAAATTACCACTCCTCAAACTCTAGAGATAGAAGGACATATCAAGAAGAAAAAGGTTCAAGCAGTGAAAGATCACATCAAGCATCAACAACAAGTTCTCCAAATTTTAAAGGATAACGACACTTCAATGCAAAATCAAATGAAACAACAGGTAGATCAACATCGTAGTGAAAAATGTTTTGATTGGGTATTTTTACTGCTACATCTCAAGCAAGCTATTTATGAGAAGGAAATGTTGGCAATACTACATGCACTTAAAAAATGGCGACCTTACCGAATGGGAAGACTCTTCAAGGATGAGGATATCAAAGCATTGTTTTGTGCTATTTCTATTATCCAACCAGATTGGATAAAAGAAGCAAAGGATAAATGGAAGAAGGACGAAGAAGTATGGCCACTTATTCAAAAGTTGCAAAAGATCCCAATTCAAACAATATTGCCAGAAATTGAAGAGGAAGGAAAAATCATATTGGAACCTGGAGCAGTCACAGAAACAAGAACCCGACAGCTACGAAATCGATCAATTTCAGAGTATCTCATCAAGTGGAAGAACTTACCCGCTGAAGATTCCACATGGGAGGACAAGAATTTTATACAGAAGCATCAAGAACTACTCAAGCGTTGAGGACAACACTTTTTGAAGGAGAGGGGCATGTTAGGTCCCTATACTACTAGTGTAACCCCTTATTGTTATTAGTACAACCCCCTTATTATATTGTTGTGCCCATGTAGTCCCCATATTGTTATTATTGTGCCCCATAGAAGCCCACTATTGTTATTATTGTGCCCTTACATTATTATGTTATGTCGGCTCTGATTATATTATGACTCTTTAGACTCCTATATATAGAAAGGAGGTCTTGTCATTTGTATCATCCAAGAATTGTTCATTTGTGTAATGTAAAGGAGGTTGCCCCTCGAAGAGGCTGATCTCTAAGGCGTAGATCTATCTTTTCTATCTTTTTGTGAGCTGGTTCCATAACATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene25481___PKIKKSKMRKFDGKDPVN-WILQMEQYFDLHGVQLLQKVCIASSYLEPDQFLWYKGLCSRKKLVTWSILTEEMIAHYEDTKSNTFFRATPQQLERVKG--LCDIVESKIMETRKSTPHNYKDGSVVSPSLPQPTRVTPQQLEEKREKGLCYNCDSKCTKGHKCAXXXXXXXXXXXXXXXXXXXXXXXDIHQDPTPEKEEMNQT--ISCKALARITTPQTLKIEGHI
A5AT89_______________PKLAKLDFPRYDGSEDLTLWICRAEQFFEFQGTSLEDQVKLAAYHLEKDAQLWYQRRKNQGHLVTWDGMDAGLLERLART-----YELKAQEVRRPTNPTFSSLVCNSNNQWNTSXPSGTK-GTDPKRILPIX-KLSPTELQRRRQQGLCYNCDEKYTMGHKC----------------KKLFFIELEEENEEAIEEEYVEETLAISLHALAGVQSPQTMRIHSQI

SNPs (tot: 146)

Position	A %	C %	G %	T %	Probability
808		25		75	0.996473
814	75			25	0.996473
815			75	25	0.996473
837	20		80		0.995493
842	81		18		0.999994
847		81	18		0.999994
859	18	81			0.999994
868		18		81	0.999994
888	66		33		0.997452
893			71	28	1.0
896			85	14	0.993533
906	85			14	0.993533
909			85	14	0.993533
916		85		14	0.993533
917		85		14	0.993533
954	33			66	0.997452
961		33		66	0.997452
964	66		33		0.997452
973	33	66			0.997452
976		66		33	0.997452
1007	80		20		0.995493
1012	20		80		0.995493
1032			50	50	1.0
1040		75		25	0.996473
1057	75		25		0.996473
1059		75	25		0.996473
1060	25	75			0.996473
1061		25	75		0.996473
1068			25	75	0.996473
1069		75	25		0.996473
1071		25		75	0.996473
1072	25		75		0.996473
1073		25		75	0.996473
1074	75		25		0.996473
1076	50	25		25	0.995533
1078		33	66		0.997452
1142			20	80	0.995493
1149	20		80		0.995493
1160		85		14	0.993533
1161	85		14		0.993533
1169			14	85	0.993533
1176		85	14		0.993533
1188	85		14		0.993533
1193	85	14			0.993533
1202		71		28	1.0
1207		85		14	0.993533
1212	42		57		1.0
1229	85		14		0.993533
1230	14	85			0.993533
1233	14	85			0.993533
1234	85	14			0.993533
1238	85			14	0.993533
1245	14	71		14	0.984337
1252			85	14	0.993533
1264		14		85	0.993533
1292	28		71		1.0
1298		14		85	0.993533
1305	14	85			0.993533
1308	14		85		0.993533
1313		12		87	0.992554
1316		87		12	0.992554
1317	37		62		1.0
1326	87		12		0.992554
1327			12	87	0.992554
1336			12	87	0.992554
1343		12		87	0.992554
1350	85	14			0.993533
1360	14		85		0.993533
1362		85	14		0.993533
1365			14	85	0.993533
1367		85	14		0.993533
1368		85		14	0.993533
1371	85	14			0.993533
1372	14			85	0.993533
1374		14	85		0.993533
1375		14	85		0.993533
1379	71	14	14		0.984337
1383	14			85	0.993533
1384		14		85	0.993533
1385		85	14		0.993533
1387	85	14			0.993533
1400		83	16		0.994512
1401	83		16		0.994512
1408			16	83	0.994512
1409	16		83		0.994512
1411		16		83	0.994512
1417	16	83			0.994512
1425	50		50		1.0
1432	16	66			0.988813
1439		16		83	0.994512
1457			80	20	0.995493
1461	80		20		0.995493
1466	20		80		0.995493
1468	60		20	20	0.99255
1469	20		80		0.995493
1471	60		40		1.0
1472	20		60	20	0.99255
1475		50		50	1.0
1476	25		75		0.996473
1477	75		25		0.996473
1478	75	25			0.996473
1479		25	75		0.996473
1481	75	25			0.996473
1483			25	75	0.996473
1486		25	75		0.996473
1487	25		75		0.996473
1489		75	25		0.996473
1492			25	75	0.996473
1665			33	66	0.997452
1666		66	33		0.997452
1667		66	33		0.997452
1672		33	66		0.997452
1678	66			33	0.997452
1689	66		33		0.997452
1694	40		40	20	1.0
1702	80	20			0.995493
1704	20		80		0.995493
1717	20		80		0.995493
1740	25		75		0.996473
1743			75	25	0.996473
1745			75	25	0.996473
1747	25		75		0.996473
1748	25		75		0.996473
1749	25	75			0.996473
1758		25		75	0.996473
1766	25	75			0.996473
1772	25		75		0.996473
1773		25		75	0.996473
1802		66		33	0.997452
1805	33			66	0.997452
1807	66			33	0.997452
1816	33			66	0.997452
1820	33		66		0.997452
1831		33	33	33	0.997753
1832		66		33	0.997452
1844		33		66	0.997452
1851		25	75		0.996473
1852		75	25		0.996473
1854		75		25	0.996473
1878	75		25		0.996473
1899			66	33	0.997452
1900		33		66	0.997452
1906		66		33	0.997452
1908	33		66		0.997452
1927		33		66	0.997452
1929		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain