SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25457

Length: 1809 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25457

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ER lumen protein retaining receptor n=1 Tax=Picea sitchensis RepID=A9NN13_PICSI	-	-	95%
FL-Next	sp=ER lumen protein retaining receptor; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	localization	GO:0051179	Biological Process	89%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ER lumen protein retaining receptor	IPR000133	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN13

Fln msg:

Fln protein: MNIFRLAGDMTHLMSVLVLLLKIHTIKSCAGISLKTQELYALVFITRYLDLFFDYISFYNTVMKLIFIASSISIVWYMRSHKIVRRSYDKEQDTFRHYLLVIPCFILALLVHDKFTFIEVLWAFSIYLEAVAILPQLVLLQRSRNIDNLTGQYVFFLGAYRGFYILNWIYRYFTEKHYFRWIPWVSGLVQTALYADFFYYYFKSWKNNERLQLPA*

Protein Length: 217

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATTATGCGTCGTGACCTTGGCTGTCACTCAATTTTCTTAATACAAACCCTTCCTTGCAAGTAAGAAACATCCCCATATTTGAAGTGTGGAGCTCTCTTGTCTTAGGGATCTTTATACCGTGTACGTTTTCAAGACCTCATTTGGCCAAAATCTCGTATTCACTCAACTGCAGTGATCATTTTGCTTTTTAAGTCGTTCTCATCTGCTAAATGCCCTTTTGCATCTCGTATATCGCGCGAGCTCGCCATGTGTGCCAAGGAAATTCTTCTACATTGTTCTGAAATCTCGGATCCCTGTTAATCTTGCTGCTCGGCATTTGGAGGTCGTCGGTTCGAATCCATTCCGTGCTATTGATTCCGAAAACGCGAGAGGTTTTTTGGTTCTCGCAACGGTTCCATCGCATTGTTCTGACCCCAGTTCCTGGATCTGGGGATTTTCGCTGTTTAACGAGCGAAA_-_ATGAATATCTTCAGGTTAGCAGGGGACATGACGCATTTAATGAGCGTCCTGGTTCTGCTGCTGAAGATCCACACCATTAAATCCTGCGCAGGGATTTCGTTAAAGACTCAGGAGCTTTACGCCCTCGTGTTTATTACTCGTTACTTGGATTTATTCTTCGATTATATTTCGTTCTACAATACCGTAATGAAGCTGATCTTTATAGCGAGTTCAATTTCCATCGTCTGGTACATGAGGAGCCACAAGATTGTGAGGAGATCCTATGACAAGGAGCAAGATACTTTCAGGCATTATCTCCTGGTCATACCCTGCTTCATCTTGGCTCTCCTCGTACACGACAAATTTACATTCATAGAGGTTCTCTGGGCATTCTCTATTTACTTGGAAGCAGTTGCTATTCTTCCACAGCTAGTTTTATTACAGAGGAGCAGGAACATAGACAACTTGACGGGGCAATATGTTTTCTTTCTTGGGGCTTACAGGGGGTTCTACATCCTAAATTGGATTTATCGCTATTTCACTGAAAAACATTACTTCCGATGGATACCTTGGGTATCTGGGCTCGTGCAGACAGCTCTTTATGCAGATTTCTTTTACTACTATTTCAAAAGCTGGAAAAACAATGAGAGGTTGCAGTTACCAGCTTAG___TTTTCATTATCAAGTTGGTTCTCCATGCAAGGAGTTTTGATTTGAGCAAACTCAGTTCTTGCTCCAATGCTATGTAAATCTTCCCATTGAAGGTTAGGGTGATCTTGGTAACAAAACCCCTTTTTCAATTTGTTTGACCTTAGCTAATGTAACCGCTTATTCAGTTTGTCTTCTGATTCTGATAAAATATAGAGCTGTCAGAATCTTGTGATCTCAATTATCTCTGCAAGCCAATCTTTTTATGAGAATTCCAGAAGTCATCTTCAAGAAAATAGGGCACATATCAATTTTTTTTTTGGGAGTGTTACTAAGCTAGTCCATTGATTTATACTAAAATGCTAAAGATATTAAGATGTATCAAGACTATGCTGATGCAGTAAATTATTAGGATATGCTCTTTGTGCTGTGAAATCAGACTATTATTGTGGCTCGCTCTTGCCACCACATTTACAAATGAATGCTGCAGATTTTGAATGTAATTATTTGGTGATTGTAAATTTCCTTTTAGTCGAGCGTGCCTAGAAATTTTTAGGCCTTGCAGGTTATTTAATAATGCAACACAAATAAATTTGTTATTATGATGTCTGAAAGGATCTATGCAACAAACTGGATTGCAATTTCTAAATTGGCAATTATAAATAAGATTTACCTATACTGAAAAATTCTAAGAGATTGTAC

Fln Alignment:

sp_v1.1_unigene25457___MNIFRLAGDMTHLMSVLVLLLKIHTIKSCAGISLKTQELYALVFITRYLDLFFDYISFYNTVMKLIFIASSISIVWYMRSHKIVRRSYDKEQDTFRHYLLVIPCFILALLVHDKFTFIEVLWAFSIYLEAVAILPQLVLLQRSRNIDNLTGQYVFFLGAYRGFYILNWIYRYFTEKHYFRWIPWVSGLVQTALYADFFYYYFKSWKNNERLQLPA
A9NN13_______________MNIFRLAGDMTHLMSVLVLLLKIHTIKSCAGISLKTQELYALVFVTRYLDLFSDYVSFYNSVMKIIFIASSISIVWYMRSHKIVRRSYDKEQDTFRHYLLVIPCFILALLVHDKFTFREVLWAFSIYLEAVAILPQLVLLQRSRNIDNLTGQYVFFLGAYRGFYILNWIYRYFTERHYFRLIPWVSGLVQTALYADFFYYYFKSWKNNEKLQLPA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
236	88			11	0.999952
440		25		75	0.996473
792		85	14		0.993533
796			14	85	0.993533
798		85	14		0.993533
800		14		85	0.993533
808		85	14		0.993533
879		11		88	0.923564
993		11		88	0.999952
1054	91			8	0.999807
1179	88		11		1.0
1180	88		1	9	1.0
1286	6		93		0.999999
1403	90		2		0.999998
1412	85		12	2	1.0
1417	92			7	0.999664
1420		16		83	0.994512
1421	16			83	0.994512
1422		16		83	0.994512
1424		16		83	0.994512
1425	16			83	0.994512
1704		12		87	0.992554
1730			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain