SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25454

Length: 2052 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25454
TGGATTTGGTTTTGGGTGTTTTTTTAAGACATGGAACCCAAAAAGCTTGAGGACGGGCGTGATCTCGCGTCAATCGAATCCAGGAAGCAGGATCAAGCAGCAATATCAGTCAAAACAGGTCAAAAACTCCCAGATTTTCTCCAATCTGTGAAACTGAAGTATGTGAAATTGGGTTATCACTATGTGATTAGCCATGCAATGTATCTGTTTTTATCTCCCATTATAGTCATTGTCGCAGCAGAACTGGGCACCCTTGAGCCTCAAGATCTGTTTGATTTATGGCACCATCTTCGTTATAATCTAGTGACTGTAATTGTATGTTCCACATTGTTGGTCTTTGTGATAACATTGTACTTTATGACTAGGCCGAGGCCAGTTTACCTTGTAGATTTTGCATGCTATAAGCCGGATGATGAGAGAAAATGCACTAGAGAAGTTTTTATGCGTTGCTCAAGTTTGACTGGTACGTTCTCTGAATCAAGCCTGGATTTTCAGAGGAAAATCCTTGAGCGTTCAGGGTTGGGAGAGGAGACATACTTGCCTGAGGCAGTGCTGAGAGTGCCCCCAAATCCATGCATGGCAGAGGCTAGAAAAGAGGCAGAGATTGTCATGTTTGGAGCCCTTGATGAGCTTTTTGAGAAGACCGGTGTTAAGCCTAAAGATATTGGCATACTTGTTGTGAATTGTAGCCTTTTCAACCCTACACCTTCATTGTCTGCGATGATTGTAAATCATTACAAATTAAGGGGGAATATAGTCAGTTTCAATCTAGGTGGAATGGGTTGTAGTGCAGGGATGATATCTATTGATCTAGCCAAGGATTTGCTCCAAGTTCATAGAAATTCCTATGCAATTGTTGTTAGCATGGAAAACATAACATTGAATTGGTATTTTGGTAACAACAGATCCAAGCTGGTATCAAATTGTATTTTTAGGATGGGAGGTGCTGCAATATTGTTATCTAACAAGAGATCAGAGAAGAGGAGGGCAAAATATGAGCTCGTGCACACCGTGAGGACTCACAAGGGAGCAGATGACAAGTGTTTCCAGTGTGTTTATCAAGAGGAGGATGAAGCGGGGAAGATGGGAGTTTCCCTTTCGAAAGAACTCATGGCCGTTGCAGGTGATGCTTTGAAGACTAACATAACAACTTTAGGTCCTCTGGTTCTTCCGATGTCAGAGCAGCTTCTCTTCTTTGCAACTTTGGTGGGAAGAAAACTTCTGAAGATGAAGATCAAGCCGTACATTCCCGATTTCAAGCTTGCATTTGAGCATTTCTGTATACATGCCGGAGGGAGGGCAGTCTTGGACGAGTTGGAGAAGAATTTGCAGCTTTCAGAATGGCATATGGAGCCGTCGAGGATGACCCTCTATCGGTTTGGGAATACATCCAGCAGCTCATTGTGGTACGAGCTTGCTTATAGCGAGGCAAAGGGAAGGATCAGAAAGGGAGACAGGACCTGGCAAATTGCCTTTGGGTCCGGATTCAAGTGCAACAGTGCTGTTTGGAGGGCCCTGAGGACTATCAATCCGAGTTGTGAGAAGAACCCATGGATCCAAAGCATTGATCAGTTCCCTGTTGATGTTCCCAGAGTTTCAACAATCCGATAGGGTTTCTCGTTTATGAGCTAAATTTCAAGACATCTTAGATCTTTCTATCATGTACTCTGTGTTACCTTAGAGATATTGTACTGCAAAGTAATGATGTTGAACAGGAAAGGATGACTTCTGTGGTTTATCTTTGTTTAGCTATCTAGCTAATTGATTTTGCAGAAGATCCCAAACTGACCAGGCCAGTTATGGCTTTATTCTTTCATTTTCTCCCTTGTTTGGGCATTGGCTTGCCAATGCTGAGCTGCGGTTACCAGTTATTCTTGTGTCTTTGATGAAGTTTCATGATGCAATGTTAATTTCAAGTAAAAGGGATTGTATCATACAGTCAATCCAAGTTTATGTATGATCCGAATGATGTCAATTGTTGATGAATCTTGTTTATGTAAAAGATTTGTGGAACATCTATTAACCAATGTCAAATCAGTTTTCCTTGAAAGC

Ace file of the UniGene sp_v1.1_unigene25454

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-ketoacyl-coa synthase family protein	-	-	80%
FL-Next	sp=3-ketoacyl-CoA synthase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	beta-ketoacyl- synthase	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	0.0	90%
Blast2go	response to light stimulus	GO:0009416	Biological Process	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O48780

Fln msg:

Fln protein: MEPKKLEDGRDLASIESRKQDQAAISVKTGQKLPDFLQSVKLKYVKLGYHYVISHAMYLFLSPIIVIVAAELGTLEPQDLFDLWHHLRYNLVTVIVCSTLLVFVITLYFMTRPRPVYLVDFACYKPDDERKCTREVFMRCSSLTGTFSESSLDFQRKILERSGLGEETYLPEAVLRVPPNPCMAEARKEAEIVMFGALDELFEKTGVKPKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIVSFNLGGMGCSAGMISIDLAKDLLQVHRNSYAIVVSMENITLNWYFGNNRSKLVSNCIFRMGGAAILLSNKRSEKRRAKYELVHTVRTHKGADDKCFQCVYQEEDEAGKMGVSLSKELMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGRKLLKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPSCEKNPWIQSIDQFPVDVPRVSTIR*

Protein Length: 528

Fln nts: TGGATTTGGTTTTGGGTGTTTTTTTAAGAC_-_ATGGAACCCAAAAAGCTTGAGGACGGGCGTGATCTCGCGTCAATCGAATCCAGGAAGCAGGATCAAGCAGCAATATCAGTCAAAACAGGTCAAAAACTCCCAGATTTTCTCCAATCTGTGAAACTGAAGTATGTGAAATTGGGTTATCACTATGTGATTAGCCATGCAATGTATCTGTTTTTATCTCCCATTATAGTCATTGTCGCAGCAGAACTGGGCACCCTTGAGCCTCAAGATCTGTTTGATTTATGGCACCATCTTCGTTATAATCTAGTGACTGTAATTGTATGTTCCACATTGTTGGTCTTTGTGATAACATTGTACTTTATGACTAGGCCGAGGCCAGTTTACCTTGTAGATTTTGCATGCTATAAGCCGGATGATGAGAGAAAATGCACTAGAGAAGTTTTTATGCGTTGCTCAAGTTTGACTGGTACGTTCTCTGAATCAAGCCTGGATTTTCAGAGGAAAATCCTTGAGCGTTCAGGGTTGGGAGAGGAGACATACTTGCCTGAGGCAGTGCTGAGAGTGCCCCCAAATCCATGCATGGCAGAGGCTAGAAAAGAGGCAGAGATTGTCATGTTTGGAGCCCTTGATGAGCTTTTTGAGAAGACCGGTGTTAAGCCTAAAGATATTGGCATACTTGTTGTGAATTGTAGCCTTTTCAACCCTACACCTTCATTGTCTGCGATGATTGTAAATCATTACAAATTAAGGGGGAATATAGTCAGTTTCAATCTAGGTGGAATGGGTTGTAGTGCAGGGATGATATCTATTGATCTAGCCAAGGATTTGCTCCAAGTTCATAGAAATTCCTATGCAATTGTTGTTAGCATGGAAAACATAACATTGAATTGGTATTTTGGTAACAACAGATCCAAGCTGGTATCAAATTGTATTTTTAGGATGGGAGGTGCTGCAATATTGTTATCTAACAAGAGATCAGAGAAGAGGAGGGCAAAATATGAGCTCGTGCACACCGTGAGGACTCACAAGGGAGCAGATGACAAGTGTTTCCAGTGTGTTTATCAAGAGGAGGATGAAGCGGGGAAGATGGGAGTTTCCCTTTCGAAAGAACTCATGGCCGTTGCAGGTGATGCTTTGAAGACTAACATAACAACTTTAGGTCCTCTGGTTCTTCCGATGTCAGAGCAGCTTCTCTTCTTTGCAACTTTGGTGGGAAGAAAACTTCTGAAGATGAAGATCAAGCCGTACATTCCCGATTTCAAGCTTGCATTTGAGCATTTCTGTATACATGCCGGAGGGAGGGCAGTCTTGGACGAGTTGGAGAAGAATTTGCAGCTTTCAGAATGGCATATGGAGCCGTCGAGGATGACCCTCTATCGGTTTGGGAATACATCCAGCAGCTCATTGTGGTACGAGCTTGCTTATAGCGAGGCAAAGGGAAGGATCAGAAAGGGAGACAGGACCTGGCAAATTGCCTTTGGGTCCGGATTCAAGTGCAACAGTGCTGTTTGGAGGGCCCTGAGGACTATCAATCCGAGTTGTGAGAAGAACCCATGGATCCAAAGCATTGATCAGTTCCCTGTTGATGTTCCCAGAGTTTCAACAATCCGATAG___GGTTTCTCGTTTATGAGCTAAATTTCAAGACATCTTAGATCTTTCTATCATGTACTCTGTGTTACCTTAGAGATATTGTACTGCAAAGTAATGATGTTGAACAGGAAAGGATGACTTCTGTGGTTTATCTTTGTTTAGCTATCTAGCTAATTGATTTTGCAGAAGATCCCAAACTGACCAGGCCAGTTATGGCTTTATTCTTTCATTTTCTCCCTTGTTTGGGCATTGGCTTGCCAATGCTGAGCTGCGGTTACCAGTTATTCTTGTGTCTTTGATGAAGTTTCATGATGCAATGTTAATTTCAAGTAAAAGGGATTGTATCATACAGTCAATCCAAGTTTATGTATGATCCGAATGATGTCAATTGTTGATGAATCTTGTTTATGTAAAAGATTTGTGGAACATCTATTAACCAATGTCAAATCAGTTTTCCTTGAAAGC

Fln Alignment:

sp_v1.1_unigene25454___QKLPDFLQSVKLKYVKLGYHYVISHAMYLFLSPIIVIVAAELGTLEPQDLFDLWHHLRYNLVTVIVCSTLLVFVITLYFMTRPRPVYLVDFACYKPDDERKCTREVFMRCSSLTGTFSESSLDFQRKILERSGLGEETYLPEAVLRVPPNPCMAEARKEAEIVMFGALDELFEKTGVKPKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIVSFNLGGMGCSAGMISIDLAKDLLQVHRNSYAIVVSMENITLNWYFGNNRSKLVSNCIFRMGGAAILLSNKRSEKRRAKYELVHTVRTHKGADDKCFQCVYQEEDEAGKMGVSLSKELMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGRKLLKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPSCEKNPWIQSIDQFPVDVPRVSTI
O48780_______________RNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDELLAKTNVNPKDIGILIVNCSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLHSIPNTYAMVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNKRWDRRRSKYELVDTVRTHKGADDKCFGCITQEEDSASKIGVTLSKELMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVGRKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRIWQIAFGSGFKCNSSVWRAVRSVNPKKEKNPWMDEIHEFPVEVPKVSTI

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
183		16		83	0.994512
186		16	83		0.994512
187	83		16		0.994512
189			16	83	0.994512
191		16	83		0.994512
194	83			16	0.994512
198	77		22		0.999999
199	77	11		11	0.968132
200		11		88	0.923564
204	88	11			0.923564
205	11	11		77	0.968132
208	11		77		0.968132
210			11	88	0.923564
211			11	88	0.923564
212		11		88	0.923564
214	88		11		0.923564
217	11			88	0.923564
219		88		11	0.923564
229		55	44		1.0
390	80			20	0.995493
391	20			80	0.995493
1198		66		33	1.0
1342			85	14	0.993533
1343	85		14		0.993533
1344	85		14		0.993533
1345			14	85	0.993533
1428	11	88			0.923564
1686	11		88		0.999952
1947		11		88	0.999952
1961		23		76	1.0
1974	12		87		0.999964
2022	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain