SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25453

Length: 1810 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25453

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Major sperm protein [Medicago truncatula]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major sperm protein	IPR000535	-	0.0	77%
Blast2go	PapD-like	IPR008962	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRI2

Fln msg:

Fln protein: MMATADFGGPTTQRSSKGWNLCPMPWLNNGGSSSSVTNGNNSNRGSVDRDPNSNRHPQNTKQRSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNEKKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLDKLKKRLAEAEALNQARKKPQDDNAPKSTASAEGVLDQWRERREKYLARQQVEDSV*

Protein Length: 264

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTAAAATCGGATGAACCATTAACACTGTAGCTTCTCATGGTAAGACTATTCATTACATTGTTGATGCAGGCTTCTTGCGTATATGAAGCCAAATGGAAGTGACTTGTGACCCCCAACTCCATGGAAGCTCTGTAAAGTTGAAGTTGTAAAGAAGTTTGCAGTTCTGGCAAAAAAATAAACAATTTAGCTTGATAGAACGTGCAATCATGGTTGAAGCTTGCTAAATTCCGAAGGAAAGAAGAACGAAAGGGGGAAGCCCATGGGGGTTGCAAAAAGTTGAAGGGATGGCAAAGTCAAAGAGAATATACTCTCTGGATTGCCATTGCATTCAATGATTTGAGGGAACGAATCAAGGTTGCTAAATTCATACCCGACCAGCTCTCTGCCATTAACCTGCCTGCACTTTCTCATCTAAAAGGTCTTATTTTGATGCTTAATTCTGTCCTTCAGAGCCATACCCGCCTCTTCAGTATATGACCGAATTCTATAAGCTCCGGGAAGGGAAGGGATTCGAACACTGGTTGC_-_ATGATGGCCACCGCTGACTTTGGGGGTCCTACAACGCAGCGGAGTTCCAAGGGCTGGAATCTCTGCCCTATGCCCTGGCTGAACAATGGAGGAAGCAGCAGCAGCGTTACTAATGGTAATAATAGCAACAGGGGGTCAGTTGATCGAGACCCTAACAGCAATCGGCACCCACAAAATACAAAACAGAGATCCTTGGGGGCGATTGCCAAGGCCTCCTTTCTTGTCAGGCGACGCCTGCGGTTCGATCCCGACCGGAAACTCTATTTCATATATGAGCCGGGGAAGCAGGTCTCCAGCGCTGTGAGGATTAAAAACGTGAGCAGATCTTACGTCGCATTCAAGTTCCAGACAAATGCTCCTAAAAGTTGTTTTATGCGGCCTCCTAATGGCATCCTTGCTCCAAAAGAGTCAATTTTAGCAACAGTTATGAAGTTTGTCGAGCAGCCAGAGCATCCTAATGAGAAGAAGACAAAAGACAAATTTAGGATTGTTAGTTTGAAAGTCAAAGAAGGGGCTGAATTCACTTCAGAACTGTTTGACGAGCATAAGGAATTAGTGGCAGTTGAAAGAGTTTTGCAAGTAGTGTTTCTGGATCCTCAACGCCCTTGCCAGGATTTGGATAAGTTGAAGAAACGTCTTGCAGAAGCTGAAGCTCTCAACCAAGCACGGAAAAAGCCTCAGGATGACAATGCTCCAAAATCAACAGCTTCAGCAGAAGGAGTTCTAGATCAATGGAGGGAGCGAAGGGAGAAATATCTAGCCAGGCAACAAGTAGAAGATTCTGTATGA___TACTATGAAATTGGTGGCTTTTAGCAGCTTCAGGGCAGATACAATGATAAGCTTTAAACTAGTTGCAGGGTTACATCCTGATCAGATATCAAATGTAAACTGAGGCTCTTTGAGGGAAAACTTTGAATGTAATACAGTTCACTGTTGCCACCCAAGGCTTACATTGATTAGGGTCACAGCTGTTACTGGTACATAGTCTTCAGCATGCATTGCTTTTTGCAGTCTGCTGATTCTCGCAATTTGCTGATTTTAGCAGGCATAAACTTTTACTCAGTCCATGTTGGACGGAGCGACAGAAATTGTCTATAGTTTAGTTAGGGGTTGGAATCAGGGGTTGAATTTTATTTTGTGTCTCTGGAAAATCTTTTGTAATTTTGACCAACCACCTGACCTGTGTGGCAGGATTGGTTGTTTTGTATCTTGTTCGCCAATCGATTTTAATTCATTTGGATTTATTTTGAGTCTTT

Fln Alignment:

sp_v1.1_unigene25453___MMATADFGGPTTQRSSKGWNLCPMPWLXXXXXXXXXXXXXXXXXXXVDRDPNSNRHPQNTKQRSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNEKKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLDKLKKRLAEAEALNQARKKPQDDNAPKSTASAEGVLDQWRERREKYLARQQVEDSV
A9NRI2_______________MMATADFGGSTAQRSSKGWNLCPMPWLNNGGSSSNVNSGNNSNRGSVDRNPNSNRHPLNTKQMSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNEKKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLEKLKKRLAEAEALNQARKKPQDDNTPKSTDPAEGVLDIWKDRREKYLARQQVEDSV

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
39		16	83		0.994512
40	83		16		0.994512
50	83		16		0.994512
51	83		16		0.994512
53	62		25	12	1.0
54		62	12	25	1.0
55		25		75	1.0
56		12	87		0.992554
57	12			87	0.992554
58	62	12	25		1.0
59	25		62	12	1.0
61	12	25			1.0
64		75	25		1.0
65			25	75	1.0
72	75	25			1.0
74		25	75		1.0
75	75			25	1.0
77	12			87	0.992554
125		11	88		0.923564
127	88			11	0.923564
128	88	11			0.923564
139	88			11	0.923564
142		88		11	0.923564
144	11	88			0.923564
368		20		80	0.995493
370	80			20	0.995493
371		20	80		0.995493
373			80	20	0.995493
374	60		20		0.99255
378	80	20			0.995493
379	80			20	0.995493
381		80	20		0.995493
382	80		20		0.995493
383	80	20			0.995493
384			80	20	0.995493
387		20		80	0.995493
388	20		80		0.995493
391	80	20			0.995493
400	40	60			1.0
414		20		80	0.995493
503	60		40		1.0
504	40			60	1.0
505	60		40		1.0
510	40	60			1.0
512	60		40		1.0
513	60	40			1.0
514		40		60	1.0
529			66	33	0.997452
1060	20		80		0.995493
1062		80	20		0.995493
1063	80		20		0.995493
1064	80		20		0.995493
1121			11	88	0.923564
1122			11	88	0.923564
1234		90		10	0.90298
1251		10		90	0.90298
1310	88		11		0.923564
1720	11			88	0.923564
1812		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
648	659	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain