SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25440

Length: 1980 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25440
GTCCGAACTACATGCCAATTGGATTTCGAAACCCTCGGTGTACACGTCACTGTTTCCAATGTGGGCGGCTGCCTCGACCCGAGGAAATTGTAATGAAATCATGTGTGCCTGAGCATATATAAGTACGTGTGCGCCTATGCATTGGGATATTAGGCCTGAATTTGAGCGACTGAGTTCATTTTGCCAGGTTTGTTTGGAATCAGGACTCTGGTGTGTAGTGAAAAATGGACATGGAGAAGGTGCAAATGAGGCAACAAGTGCTAATGGGGCATTTAACGGGGTTCTCCACAAACCCCATAGCTGCTCATAATTTGCTTGTGGCCCCTTCTGTATGCATGGGTGGAGACAGTGGAATTAATCATGCTACAGCTGCAGAGAGCTGCAACGATGACGACGTTGTGATAGTGGCTGCTTACAGGACCCCTCAATGCAGGGCAAAGAAAGGAGGATTCAAAGATGCTCGCGCAGAGGATCTTCTAGATCCTGTTTTAAAGGCTGTGGTGGAAAGGACCGGGATTAGACCTGATGAAGTTGGTGACATTGTTGTTGGCACAGTTCTGGCCCCTGGCTCTCGCAGAGCCATGGAATGCCGCATGGCTGCTTTCTATGCAGGATTTCCAGAGAGTGTACCCATTAGGACCGTGAATAGGCAGTGCTCCTCTGGACTTCAAGCAGTTGCTGATGTTGCATCCGCTATTAAATGTGGATACTATGACATTGGCATTGGTGCAGGACTGGAGTTTATGTCAGAGAACTCTATAGGTTGGGGACCTATAGATAATCCAAGGATTCAGACTAACCAACAAGTACAAGATTGCTTGCTTCCAATGGGTATCACCTCTGAAAATGTCGCCGAGCGATATGGGGTGTCACGAGAGAGCCAAGATGAGGCTGCGGTACGGTCTCATAAAAAAGCAGCAGCAGCAACAGCAGCAGGAAGGTTTAAAGATGAAATCATCCCAGTACATACTCAGATTGTTGATGCTAAAACTGGACAAAGAAAACCTGTGACTATATCTGTTGATGATGGGATTCGACCAAATACATCCATGTCTGATCTTGCGAAGCTCAAGCCAGCATTTAAGAAGGGTGGCAGCACCACTGCAGGGAATTCAAGTCAAGTTACTGATGGAGCTGGTGCAGTACTGCTTATGAAGAGGAGAACGGCAATGCAGAAAGGATTGCCTATACTTGGAGTTTTCAGGAGCTTTGCAGCAGTTGGATGTGATCCAGCCGTAATGGGAATTGGTCCAGCTGTAGCAATACCAGCAGCAGTCAAGGCAGCTGGACTACAAATTGGTGATATTGATCTTTTTGAAATAAACGAGGCATTTGCCTCTCAGTATGTATACTGTTGTCAGAAGTTGGAGCTGGATCCAGAAAAAGTCAATGTAAATGGTGGAGCTATTGCGCTCGGTCACCCACTTGGAGCAACAGGAGCTCGCTGTGTTGGAACATTACTCCATGAAATGAAACGACGCGGTAAAGATTGTAGGTTTGGAGTAATCTCCATGTGTATAGGGACTGGAATGGGAGCAGCTGCAGTGTTTGAGCGTGGCACCAATGCCAGATCAATCTGATCACATAATTTTCTTTCAAATGATGCCTAGGTTCTTACTTCATAAATGTACGTATAATAAATTTAGTAAAACCAAGAACAAGTGCCCTGACAGTTTCCAGGGGATGAGCATTATTCTTCCTTGAATTAGTCAAGGACATCCTTCTACAGTTTCATTGTTAAACATTGAATCGCAAATAAATAGAAGAGTGGAGATTTGAGTGTCAATGCCGAATCCTAAATCGACCTTGACTATAACATCGAATACAATCTGCAATGGAAACGATTCCAAAAGTCTGGCTAGTTTGTACCTTGTAATGAAAACAGGGAAAGATAAGATGCGTCTTCAAAGACTAGATTGTATAACCCCAAAGAATTTTTATAAAAAATACAATGTGTGTGATTATCACTATTCTAAGAGC

Ace file of the UniGene sp_v1.1_unigene25440

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl CoA thiolase 2 n=1 Tax=Petunia x hybrida RepID=C8YNG7_PETHY	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	3-ketoacyl- thiolase	-	-	83%

Source	InterPros	Term	Type	Identity
Blast2go	Thiolase	IPR002155	-	83%
Blast2go	Thiolase-like, subgroup	IPR016038	-	83%
Blast2go	Thiolase-like	IPR016039	-	83%
Blast2go	Thiolase, active site	IPR020610	-	83%
Blast2go	Thiolase, conserved site	IPR020613	-	83%
Blast2go	Thiolase, acyl-enzyme intermediate active site	IPR020615	-	83%
Blast2go	Thiolase, N-terminal	IPR020616	-	83%
Blast2go	Thiolase, C-terminal	IPR020617	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED9

Fln msg:

Fln protein: MDMEKVQMRQQVLMGHLTGFSTNPIAAHNLLVAPSVCMGGDSGINHATAAESCNDDDVVIVAAYRTPQCRAKKGGFKDARAEDLLDPVLKAVVERTGIRPDEVGDIVVGTVLAPGSRRAMECRMAAFYAGFPESVPIRTVNRQCSSGLQAVADVASAIKCGYYDIGIGAGLEFMSENSIGWGPIDNPRIQTNQQVQDCLLPMGITSENVAERYGVSRESQDEAAVRSHKKAAAATAAGRFKDEIIPVHTQIVDAKTGQRKPVTISVDDGIRPNTSMSDLAKLKPAFKKGGSTTAGNSSQVTDGAGAVLLMKRRTAMQKGLPILGVFRSFAAVGCDPAVMGIGPAVAIPAAVKAAGLQIGDIDLFEINEAFASQYVYCCQKLELDPEKVNVNGGAIALGHPLGATGARCVGTLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGTNARSI*

Protein Length: 453

Fln nts: GTCCGAACTACATGCCAATTGGATTTCGAAACCCTCGGTGTACACGTCACTGTTTCCAATGTGGGCGGCTGCCTCGACCCGAGGAAATTGTAATGAAATCATGTGTGCCTGAGCATATATAAGTACGTGTGCGCCTATGCATTGGGATATTAGGCCTGAATTTGAGCGACTGAGTTCATTTTGCCAGGTTTGTTTGGAATCAGGACTCTGGTGTGTAGTGAAAA_-_ATGGACATGGAGAAGGTGCAAATGAGGCAACAAGTGCTAATGGGGCATTTAACGGGGTTCTCCACAAACCCCATAGCTGCTCATAATTTGCTTGTGGCCCCTTCTGTATGCATGGGTGGAGACAGTGGAATTAATCATGCTACAGCTGCAGAGAGCTGCAACGATGACGACGTTGTGATAGTGGCTGCTTACAGGACCCCTCAATGCAGGGCAAAGAAAGGAGGATTCAAAGATGCTCGCGCAGAGGATCTTCTAGATCCTGTTTTAAAGGCTGTGGTGGAAAGGACCGGGATTAGACCTGATGAAGTTGGTGACATTGTTGTTGGCACAGTTCTGGCCCCTGGCTCTCGCAGAGCCATGGAATGCCGCATGGCTGCTTTCTATGCAGGATTTCCAGAGAGTGTACCCATTAGGACCGTGAATAGGCAGTGCTCCTCTGGACTTCAAGCAGTTGCTGATGTTGCATCCGCTATTAAATGTGGATACTATGACATTGGCATTGGTGCAGGACTGGAGTTTATGTCAGAGAACTCTATAGGTTGGGGACCTATAGATAATCCAAGGATTCAGACTAACCAACAAGTACAAGATTGCTTGCTTCCAATGGGTATCACCTCTGAAAATGTCGCCGAGCGATATGGGGTGTCACGAGAGAGCCAAGATGAGGCTGCGGTACGGTCTCATAAAAAAGCAGCAGCAGCAACAGCAGCAGGAAGGTTTAAAGATGAAATCATCCCAGTACATACTCAGATTGTTGATGCTAAAACTGGACAAAGAAAACCTGTGACTATATCTGTTGATGATGGGATTCGACCAAATACATCCATGTCTGATCTTGCGAAGCTCAAGCCAGCATTTAAGAAGGGTGGCAGCACCACTGCAGGGAATTCAAGTCAAGTTACTGATGGAGCTGGTGCAGTACTGCTTATGAAGAGGAGAACGGCAATGCAGAAAGGATTGCCTATACTTGGAGTTTTCAGGAGCTTTGCAGCAGTTGGATGTGATCCAGCCGTAATGGGAATTGGTCCAGCTGTAGCAATACCAGCAGCAGTCAAGGCAGCTGGACTACAAATTGGTGATATTGATCTTTTTGAAATAAACGAGGCATTTGCCTCTCAGTATGTATACTGTTGTCAGAAGTTGGAGCTGGATCCAGAAAAAGTCAATGTAAATGGTGGAGCTATTGCGCTCGGTCACCCACTTGGAGCAACAGGAGCTCGCTGTGTTGGAACATTACTCCATGAAATGAAACGACGCGGTAAAGATTGTAGGTTTGGAGTAATCTCCATGTGTATAGGGACTGGAATGGGAGCAGCTGCAGTGTTTGAGCGTGGCACCAATGCCAGATCAATCTGA___TCACATAATTTTCTTTCAAATGATGCCTAGGTTCTTACTTCATAAATGTACGTATAATAAATTTAGTAAAACCAAGAACAAGTGCCCTGACAGTTTCCAGGGGATGAGCATTATTCTTCCTTGAATTAGTCAAGGACATCCTTCTACAGTTTCATTGTTAAACATTGAATCGCAAATAAATAGAAGAGTGGAGATTTGAGTGTCAATGCCGAATCCTAAATCGACCTTGACTATAACATCGAATACAATCTGCAATGGAAACGATTCCAAAAGTCTGGCTAGTTTGTACCTTGTAATGAAAACAGGGAAAGATAAGATGCGTCTTCAAAGACTAGATTGTATAACCCCAAAGAATTTTTATAAAAAATACAATGTGTGTGATTATCACTATTCTAAGAGC

Fln Alignment:

sp_v1.1_unigene25440___MRQQVLMGHLTGFSTNPIAAHNLLVAPSVCMGGDSGINHATAAESCNDDDVVIVAAYRTPQCRAKKGGFKDARAEDLLDPVLKAVVERTGIRPDEVGDIVVGTVLAPGSRRAMECRMAAFYAGFPESVPIRTVNRQCSSGLQAVADVASAIKCGYYDIGIGAGLEFMSENSIGWGPIDNPRIQTNQQVQDCLLPMGITSENVAERYGVSRESQDEXXXXXXXXXXXXXXXGRFKDEIIPVHTQIVDAKTGQRKPVTISVDDGIRPNTSMSDLAKLKPAFKKGGSTTAGNSSQVTDGAGAVLLMKRRTAMQKGLPILGVFRSFAAVGCDPAVMXXXXXXXXXXXXXXXGLQIGDIDLFEINEAFASQYVYCCQKLELDPEKVNVNGGAIALGHPLGATGARCVGTLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGTNARSI
D5AED9_______________MRQQVLMGHLTGFSTAPLVAHNLLVSPSVCMGGDSGIDHARAAESCNDDDVVIVAAYRTPQCRAKRGGFKDTRPEDLLDPVLKAVVERTGIRPDEVGDIVVGTVLAPGSRRAMECRMAAFYAGFPESVPIRTVNRQCSSGLQAVADVASAIKCGYYDIGIGAGLEFMSEHSIGWGPVDNPRIQTNQQVQDCLLPMGITSENVAERYGVSRESQDEAAVRSHKKAAAATAAGRFKDEIIPVHTQIVDAKTGQRKPVTISVDDGIRPNTSMSDLAKLKPAFKKGGGTTAGNSSQVTDGAGAVLLMKRKMAMQKGLPILGVFRSFAAVGCDPAVMGIGPAVAIPAAVKAAGLQIGDIDLFEINEAFASQYVYCCQKLELDPEKVNVNGGAIALGHPLGATGARCVGTLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGSNARPI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1309	90		10		0.90298
1328	75	25			1.0
1331	25	75			1.0
1332	75	25			1.0
1333		25		75	1.0
1337		75	25		1.0
1340		75	25		1.0
1344		12	75		0.975346
1346	87	12			0.992554
1348		12	87		0.992554
1349	12			87	0.992554
1399		25	75		1.0
1402		25	75		1.0
1404	75			25	1.0
1406	25	75			1.0
1407		25		75	1.0
1408	75	25			1.0
1424	12	87			0.992554
1575	53	46			1.0
1589	66			33	1.0
1911		22	77		0.999999
1930	87			12	0.992554
1931	87			12	0.992554
1932	87			12	0.992554
1934	85	14			0.993533
1948	50	50			1.0
1968	75		25		0.996473
1970		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
914	926	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain