SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25433

Length: 1518 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25433

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] emb\|CAB82947.1\| putative protein [Arabidopsis thaliana] gb\|ABP88117.1\| At3g62330 [Arabidopsis thaliana]	-	-	2.0e-15	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC27

Fln msg:

Fln protein: MLCEESRPFGRLRKIVRSNFSNVNNIESVV*KGCPTTLGVNRRSRAVAERTPSRDKNFKSRLSGAGGSRNQDFEKDSGRRFEHESHPGGGREAFYNTSRSDRARGSKSGGLNRRGEQVEEYRDENMGRQGSNRGSNTNSLVAAQMQHIAAQRLQHNSGSQPYQGMGDVPPIDMDQRYGSSQADGRWKWEGARNGTNSVPPHLYKEGRGPSDPGSGNMSPSKVRGLDGASPYYHGQMPDIMPPEGSNILLKESDQKQEMDVGFADQSLPKALEALEHRLMDDVMALVKDQNDADDEENARHQERTREIREQYQAKMVALRAQHAKRREDFFHHEMLSRVGQHQQPVLSKQYHEMAGGPMLGHDDHRGYGTSSLGEGHQVYPGGYESRRDEMQFYGNPPHSYNRTQSYDLREPYPGSRIYDSGQRYH*

Protein Length: 427

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGGAACAGCGGCAGGAG_-_ATGCTCTGTGAAGAGAGCAGACCCTTCGGGAGACTGCGGAAGATCGTACGTTCGAATTTCAGCAACGTCAACAACATCGAATCGGTCGTATAGAAGGGTTGTCCAACAACGTTGGGAGTAAACCGGAGGTCACGTGCAGTTGCTGAAAGAACCCCTTCAAGGGACAAAAATTTCAAATCACGTCTTTCTGGAGCTGGTGGTTCACGAAATCAGGATTTTGAGAAGGATAGTGGAAGACGGTTTGAACATGAAAGTCACCCTGGTGGAGGCCGTGAGGCTTTTTATAACACGTCCAGATCTGACAGGGCAAGGGGGTCGAAATCTGGAGGTTTAAACAGACGAGGTGAACAGGTTGAGGAATATAGAGACGAAAACATGGGTCGGCAGGGTTCTAACCGTGGATCAAACACAAATTCACTAGTGGCTGCTCAGATGCAGCATATAGCTGCTCAGAGATTGCAGCACAATTCTGGTTCACAGCCTTATCAAGGCATGGGAGATGTCCCACCCATTGACATGGATCAACGTTATGGGTCTTCCCAGGCAGATGGACGCTGGAAGTGGGAAGGTGCTCGTAATGGAACTAATTCTGTACCACCACACTTGTATAAAGAAGGAAGAGGTCCCTCAGATCCAGGCAGTGGAAACATGTCTCCATCTAAAGTTAGAGGGCTTGATGGAGCGAGTCCATACTATCATGGGCAGATGCCAGATATTATGCCACCAGAAGGTAGCAATATTCTACTGAAGGAGTCTGACCAGAAACAGGAAATGGATGTTGGGTTTGCTGATCAGTCTTTACCCAAAGCATTGGAAGCATTGGAGCATAGACTGATGGATGATGTAATGGCTCTTGTAAAGGATCAAAATGATGCCGACGATGAGGAAAATGCAAGGCACCAGGAGCGCACGCGAGAGATTCGTGAACAATACCAGGCAAAGATGGTAGCCTTGAGAGCACAACATGCCAAGAGACGAGAAGATTTTTTTCACCATGAGATGCTATCACGAGTTGGGCAGCATCAACAACCAGTTCTTTCAAAACAATATCATGAAATGGCTGGTGGTCCAATGCTCGGTCATGATGATCATCGTGGCTATGGTACCAGCAGCCTTGGTGAAGGCCATCAGGTCTACCCTGGAGGGTATGAATCACGCAGAGATGAAATGCAGTTTTATGGCAATCCTCCACATTCTTACAATAGAACTCAGAGCTACGATTTGAGGGAACCATATCCTGGAAGTCGAATTTATGATTCTGGTCAGAGGTACCACTGA___AACGAGTGTTGACATACAGTTGCGGTAAATTACAAGTTTGAGGTTAGCAGTTTGCCTTTATAGTTTTCAGTGTTAAACATCCAGGCCATAGATTGCATTTGCTGCACTATTTTTATCTGGTATAACTTGAATAGTGTTTGATTTAGAAATGCCCAAACAAAGTGTTGGTCTTCAAAATTCAAGATGATGTCTGAAATATG

Fln Alignment:

sp_v1.1_unigene25433___ESRPFGRLRKIVRSNFSNVNNIESVV*KGCPTTLGVNRRSRAVAERTPSRDKNFKSRLSGAGGSRNQDFEKDSGRRFEHESHPGGGREAFYNTSRSDRARGSKSGGLNRRGEQVEEYRDENMGRQGSNRGSNTNSLVAAQMQHIAAQRLQHNSGSQPYQGMGDVPPIDMDQRYGSSQADGRWKWEGARNGTNSVPPHLYKEGRGPSDPGSGNMSPSKVRGLDGASPYYHGQMPDIMPPEGSNILLKESDQKQEMDVGFADQSLPKALEALEHRLMDDVMALVKDQNDADDEENARHQERTREIREQYQAKMVALRAQHAKRREDFFHHEMLSRVGQHQQPVLSKQYHEMAGGPMLGHDDHRGYGTSSLGEGHQVYPGGYESRRDEMQFYGNPPHSYNRTQSYDLREPYPGSRIYDSGQRY
D5AC27_______________KSSSLGRRRKIARSNLSNVNDLDSFVSKGCPTTLGVNRRSRAVAERTTSRDKNFKARVSGPVASRNQDFEKDSGNRFEHESHSGGGRDAIYNTSRSDRVRGSKSLGFNKRGEQVEEYRDENMGRQGSNRGSNTNSLVAAQMQHIAAQRMQHNSSSQPYQGMADVPPMDMDQRYGSSQADGRWKWEGARNGTNSVPSHLYKEGRGPSDPSSGNISPSKVRGPDGASPYYHGQMPDIMPPEGSNVLLKDSDQKQEMDVGFADQSLPKSLEALEHKLMDEVMTLIKDQNDAEDEENARHRECTREIHEQYQAKIVALRTQHAKRREEFFRHELLSRVGQHQQPVLSKQFHETAGGPMLGHDDHRGYGT-GLGEGHQVYPGGYESRRDEMQYYGNPPHSYNRNQGYDIREPYPGSRMYDSAQRY

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
231	20			80	0.995493
232		20		80	0.995493
235			80	20	0.995493
242			80	20	0.995493
243		20		80	0.995493
244	20		80		0.995493
245		20	80		0.995493
1188		85	14		0.993533
1193		14	85		0.993533
1194		14	85		0.993533
1195			85	14	0.993533
1197	85		14		0.993533
1198			14	85	0.993533
1199		14	85		0.993533
1200	85			14	0.993533
1201	85		14		0.993533
1310		14	85		0.993533
1314	85			14	0.993533
1317		14	85		0.993533
1318		14	85		0.993533
1321		85		14	0.993533
1322		85	14		0.993533
1323	85		14		0.993533
1327	85			14	0.993533
1328	85	14			0.993533
1331		14	85		0.993533
1488	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain