SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25414

Length: 1064 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25414

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	100%
FL-Next	sp=Chalcone synthase; Pinus sylvestris (Scots pine).	-	-	100%
Blast2go	chalcone synthase	-	-	98%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: P30079

Fln msg: your sequence is shorter than subject: 300 - 396

Fln protein: DARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLH*

Protein Length: 301

Fln nts: TGGACGCACGGCAGGATATGGTTGTGGTAGAGGTGCCCAGGCTTGGGAAAGAAGCCGCAGCCAAGGCAATTAAAGAATGGGGTCAGCCCAAGTCGAAGATCACTCACGTCATTTTCTGCACTACCAGTGGAGTTGACATGCCAGGCGCCGACTATCAGCTGACAAAGCTTCTTGGCCTCCGCCCCAGCGTTAAGAGAGTCATGATGTACCAACAGGGCTGCTTCGCTGGAGGCACCGTTCTCCGCGTGGCTAAAGATCTGGCTGAGAACAATCGCGGAGCTCGGGTTCTGGTTGTCTGCAGTGAAATCACTGCTGTCACATTCCGTGGCCCCTCCGACACTCACCTCGACAGCATGGTCGGCCAAGCTCTCTTTGGCGATGGTGCGGCCGCCCTCATCGTCGGAGCTGATCCCGTTCCTGAGGTGGAGAAGCCCTGTTTCGAGCTGATGTGGACCGCACAGACAATTCTTCCCGACAGCGATGGAGCCATCGACGGGCACTTGAGAGAGGTAGGCCTCACCTTCCACCTTCTCAAAGACGTTCCGGGGCTCATCTCCAAGAACATAGAGAAGAGTCTGGTTGAGGCCTTCCAGCAGTTCGGAATCTCCGACTGGAACCAGTTATTCTGGATCGCACATCCTGGAGGTCCTGCCATTCTGGATCAGGTGGAGGCCAAGCTAAATTTGGATCCCAAGAAACTGAGTGCCACGAGGCAAGTACTGAGCGACTATGGAAACATGTCGAGCGCCTGCGTGCACTTTATCTTGGACGAGATGAGGAAGTCCTCTAAAGAGAAAGGATGTTCCACCACCGGAGAGGGACTGGATGTGGGAGTTCTGTTCGGATTCGGGCCGGGCCTCACCGTGGAAACCGTCGTCCTCAAGAGCGTTCCACTACATTGA___TTGAATAGCGACCGCCTTTGAAATAAATCGTGCTACTCGCCACGGCTATAAATATATGTTCATGTGCAAGCTTAGCCAGAATCAGATCGAAACCGAAATAATGATTATCACCAGTAAATCTTGAAGTATACCATCCATGCTCGCTTAGAGTACTGTGTAATG

Fln Alignment:

sp_v1.1_unigene25414___DARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPL
P30079_______________DARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
444		85	14		0.993533
445			14	85	0.993533
861	87	12			0.992554
948		84		15	0.999986
1000	81		18		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain