SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25411

Length: 1464 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25411

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[U] COG5066 VAMP-associated protein involved in inositol metabolism	-	-	1.0e-15	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	Major sperm protein	IPR000535	-	74%
Blast2go	PapD-like	IPR008962	-	74%
Blast2go	Vesicle-associated membrane protein	IPR016763	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT66

Fln msg:

Fln protein: MPSELLSVQPNELKFPFELKKLVSCSLRLVNLTEDHVAFKVKTTSPKKYCVRPNTGVVLPQSSIDVIVTMQAQREAPPDLQCKDKFLIQSVKAPHGFSAKDITPELFNKEPEKDVHEMKLRAVYVPPPQPPSPVLESPEEGLSPRSSYSLDHGDQNAFFTDTNTKEVSELRAKLTEARAAITTLSEERAAALSKCQLLQQELAETLATKRKAESAQSHQRFSFLFVILVAIIAFIVGIIVY*

Protein Length: 243

Fln nts: GCAGTCTCAGAAGCAGTGGTATCAACGCAGAGTACATCGGGACCAACAAGACACTCACTTTGGTAAGGCATCAATTGCTGTACATTGTCTTTAAATCGGGTCGCTTTCAATCCGGGACCTATTAATATCCACCTGATCGATGCAACATCTTACGATGCCCTTTCTCTAGCCGAGTGTCTGGTGGCAGTTGCCATACGAACTTCCCGTCTTCAAGGGAAGGAACCAGAGTTGGCCGTCCAGCAGAACGAAAGAAGGAAGAGTAGCAGAAGCAAGGAAGAAACAAAGGGACAACC_-_ATGCCGTCAGAACTCTTGAGCGTTCAGCCCAACGAGCTCAAGTTTCCATTTGAACTGAAGAAGCTGGTCTCGTGCTCTTTGAGGCTTGTTAATCTCACTGAGGATCATGTGGCATTTAAGGTCAAGACGACATCTCCCAAAAAGTATTGTGTGCGTCCTAACACTGGAGTTGTTTTGCCCCAGAGTAGTATTGATGTCATTGTGACCATGCAAGCTCAACGAGAGGCTCCACCAGACTTACAGTGCAAAGACAAGTTTCTAATTCAAAGTGTTAAAGCACCACATGGTTTTTCAGCAAAGGATATTACTCCAGAATTGTTTAACAAGGAACCTGAAAAAGACGTTCATGAAATGAAATTAAGGGCTGTCTATGTCCCACCACCACAGCCACCTTCTCCTGTTTTAGAATCGCCAGAAGAAGGTTTATCACCAAGGTCATCATACTCACTAGATCATGGCGACCAGAATGCTTTCTTTACTGATACAAACACAAAAGAGGTCAGTGAATTGAGAGCGAAGCTAACTGAGGCTAGGGCAGCTATCACGACTTTAAGTGAGGAGAGGGCTGCTGCTCTGAGTAAATGTCAACTTCTTCAGCAAGAATTGGCAGAGACTCTGGCCACCAAGCGCAAAGCTGAATCTGCACAATCCCACCAAAGATTTTCTTTCTTGTTTGTCATTCTTGTTGCCATTATAGCTTTTATAGTTGGCATTATAGTTTATTGA___TTATCATCTAATTGTATTTCGTTGCTGTTGGGAAGAAATCTGTGTTGTCGATATCATCTAGCAAATGGCATTTGCTTAAATTTCAAACAAAGGTCTGGAAGAAAATCAAATCTTTTACATTGCTTTATATAAAAGCTGATTATTGTATCAGAAAGGCCCTAAGAACAGTTTAATGTTATTGCTTTTATCAATTTGCTAAGGACAAGTCTGGCATACTAACAAAATGCAATTTCACTGGCTCTAGATACTTGAGATGCTAGATTAGAATGCAACACCGATTACAATTTACAGTGTTTTGATAGTTTTAGTGCTTTTTTCATGTAAGGCTTTCAAGGTTGGATTATGTTTTGCAAATATTAATGCAACGATGTATCTATTTAAGTCTGGTACATAGTTCTCTGTAACAATTTTTTATTTGCTACTAAGTAGCTTGCATAACAAATCT

Fln Alignment:

sp_v1.1_unigene25411___MPSELLSVQPNELKFPFELKKLVSCSLRLVNLTEDHVAFKVKTTSPKKYCVRPNTGVVLPQSSIDVIVTMQAQREAPPDLQCKDKFLIQSVKAPHGFSAKDITPELFNKEPEKDVHEMKLRAVYXXXXXXXXXXXXXXXXXXXXRSSYSLDHGDQNAFFTDTNTKEVSELRAKLTEARAAITTLSEERAAALSKCXXXXXXXXXXXXXKRKAESAQSHQRFS
A9NT66_______________MPSELLSVQPNELKFPFELKKQISCSLRLVNLTEDHVAFKVKTTSPKKYCVRPNTGVVLPQSSIDVIVTMQAQREAPPDLQCKDKFLIQSVKAPYGFSAKDISPELFNKEPEKEINEMKLRAIYVPPPQPPSPVLESEEEGLSPRLSYSLDNADQNASFNDTNSKEVSELRAKLIEARAAITTLSEERAAALSKYQLIQQELAQTLAIKSKAESAQSHQRFS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
52	66			33	0.997452
53		33	66		0.997452
54	33			66	0.997452
55		33	66		0.997452
58	33		66		0.997452
59		81		18	0.999994
62			18	81	0.999994
66	81	18			0.999994
68		18	81		0.999994
69			81	18	0.999994
943	95			5	0.997749
946		94	5		0.998894
949	4	87		8	0.999414
950		91	8		0.999807
952	91		8		0.999807
953	90			9	0.999842
956		7		92	0.999664
957	7			92	0.999664
958			7	92	0.999664
959			8	92	0.999718
961	80	8		12	1.0
1058	88	11			0.999952
1063	75	6	18		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain