SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25359

Length: 507 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene25359 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	predicted protein; K08770 ubiquitin C	-	-	3.0e-36	100%
FL-Next	sp=Ubiquitin; Avena sativa (Oat).	-	-	0.0	100%
Blast2go	polyubiquitin	-	-	5.69965e-36	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	5.69965e-36	98%
Blast2go	induction of apoptosis by extracellular signals	GO:0008624	Biological Process	5.69965e-36	98%
Blast2go	anti-apoptosis	GO:0006916	Biological Process	5.69965e-36	98%
Blast2go	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051437	Biological Process	5.69965e-36	98%
Blast2go	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145	Biological Process	5.69965e-36	98%
Blast2go	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051436	Biological Process	5.69965e-36	98%
Blast2go	multicellular organismal process	GO:0032501	Biological Process	5.69965e-36	98%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	5.69965e-36	98%
Blast2go	protein binding	GO:0005515	Molecular Function	5.69965e-36	98%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	5.69965e-36	98%
Blast2go	cytosol	GO:0005829	Cellular Component	5.69965e-36	98%
Blast2go	endosome membrane	GO:0010008	Cellular Component	5.69965e-36	98%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
340			55	44	1.0
368		11		88	0.923564
379		87	12		0.992554
454		18		81	0.999994
455	30		70		1.0
471	70		30		1.0
497	88	11			0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain