SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25338

Length: 1194 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25338

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=1 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	2.0e-36	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	0.0	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response	GO:0006952	Biological Process	0.0	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: your sequence is shorter than subject: 370 - 482

Fln protein: SNLHTLDLPSCVELERLPDSFGSLSNLHSLDLHWCRKLERLPDSFGSLSNLHSLDLNWCEKLERLPDSFGSLSSLGYFNASCCANLTISSEAFGNIRTLEHIDLSGCEKVEVWPSQLGHQRSLKVLKLLGTNLKKELPSSFELPSDLEVLWIGNPLLETVMPSLGHLRKLKELRLEYRGELKCLSASVEGSSQLSWLRVAACPIIHTSEVLSDEVVYPNLSELMLEECINLVEVGTLPKALTHVNLSSCYNLRSIGGLCGLPMLRQLHIEKCNELEELPSVETMVSLEYLVVKDCLKLKSIRDLAQLTKLRRLIVEGCPQLGELEGVECCQSLRCLEVKGCPKLRWDERVVERLRQQCFRCRLEEPNGS*

Protein Length: 371

Fln nts: GTCGAACCTCCACACCTTGGACCTGCCTTCGTGCGTTGAATTGGAGAGGCTGCCAGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGGACCTGCATTGGTGCAGGAAATTGGAGAGGCTGCCAGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGGACCTGAATTGGTGCGAGAAATTGGAGAGGCTGCCAGATTCTTTCGGGAGTTTAAGTAGCCTTGGATATTTTAATGCTTCCTGTTGTGCTAATTTAACAATCTCAAGCGAAGCTTTTGGAAATATAAGAACCCTCGAGCATATAGATCTTTCCGGCTGTGAAAAGGTTGAAGTGTGGCCCTCGCAACTGGGGCATCAAAGGTCCCTGAAAGTACTGAAGTTGCTGGGCACAAATTTGAAGAAAGAATTGCCAAGTTCTTTTGAACTCCCCAGTGATTTAGAAGTTCTGTGGATAGGAAACCCTTTGCTGGAGACGGTGATGCCTTCGCTGGGTCACTTACGGAAGTTGAAGGAATTGCGTCTCGAGTATCGCGGGGAATTGAAGTGTTTGTCGGCTTCAGTTGAAGGGTCGAGTCAGTTGAGTTGGTTGAGAGTGGCTGCTTGTCCCATAATCCACACATCAGAGGTATTATCTGATGAAGTTGTATACCCCAACCTTTCAGAGTTAATGTTAGAGGAGTGTATTAATCTGGTGGAGGTTGGAACATTACCAAAGGCACTCACCCATGTGAACTTGAGTAGTTGTTATAATCTGAGAAGTATAGGAGGCCTTTGTGGTCTTCCAATGCTCCGACAGCTGCACATTGAAAAGTGTAACGAACTTGAGGAGCTGCCGAGTGTTGAAACAATGGTCTCTTTGGAATACTTGGTAGTAAAAGATTGTCTGAAGTTGAAGAGCATACGGGATTTGGCGCAGCTAACAAAACTTAGACGTCTAATTGTTGAAGGGTGCCCTCAGTTGGGCGAGTTGGAAGGAGTTGAATGTTGTCAATCATTACGGTGTCTTGAGGTCAAGGGGTGTCCCAAATTGCGGTGGGATGAGAGAGTAGTAGAGAGGCTGCGCCAGCAATGCTTCAGATGTCGGTTGGAGGAACCAAATGGAAGTTGA___AATGAAAGTGTTAAATTCGCAATTTAAAAGCAGAGAGACTAAAACATAAATGGTCTTTTCAGCGGTAAAGAAATGGGGTCCAT

Fln Alignment:

sp_v1.1_unigene25338___SNLHTLDLPSCVELERLPDSFGSLSNLHSLDLHWCRKLERLPDSFGSLSNLHSLDLNWCEKLERLPDSFGSLSSLGYFNASCCANLTISSEAFGNIRTLEHIDLSGCEKVEVWPSQLGHQRSLKVLKLLGTNLKKELPSSFELPSDLEVLWIGNPLLETVMPSXXXXXXXXXXXXXXXXXXXCLSASVEGSSQLSWLRVAACPII--------------------------------------HTSEVLSDEVVYPNLSELMLEECINLVEVGTLPKALTHVNLSSCYNLRSIGGLCGLPMLRQLHIEKCNELEELPSVETMVSLEYLVVKDCLKLKSIRDLAQLTKLRRLIVEGCPQLGELEGVECCQSLRCLEVKGCPKLR
D5AB91_______________TNLHHMNLVCCRKLKRLPDSLGNLTNLHHINLTLCRKLERLPDSFGSLMNLHHLDLSLCKKLERLPNSFGSCNRIKYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGTNI-KELPSAIEVPTDLEVLWAGSPLLDTLYPLLGDLKNLKELRLKDCRELKCLPASVGRLSQLTQLEVAGCPAIELLFKKVREQRETVRTLKFNSSIHKYMPCLQELTPQDTEISEVSFDEGVCPNLRKFILRECINLVEVGTLPNTLTYVKVSSCYNLRSIEGLSGLAMLQSLVIRKCNELHELLSVKTLVALESLYAIDCVKLKSIRELAQLTKPSHLDVSGCLELEKLEGVEYCRSLFQVVARRCPKLQ

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
839		57	42		1.0
857		16		83	0.994512
858		83	16		0.994512
861			16	83	0.994512
866	66		33		1.0
867	83		16		0.994512
869	66		33		1.0
870		50	50		1.0
873			50	50	1.0
874	16		66	16	0.988813
875		33		66	1.0
876	50			50	1.0
878		16		83	0.994512
881	83			16	0.994512
882	83	16			0.994512
888		16		83	0.994512
889		83	16		0.994512
890		16		83	0.994512
895			16	83	0.994512
921		20	80		0.995493
938	33		66		0.997452
1006			36	63	1.0
1007	36		63		1.0
1008			36	63	1.0
1012			40	60	1.0
1013	50		50		1.0
1018	50		50		1.0
1131		75		25	0.996473
1132			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain