SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25331

Length: 1538 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	polyubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	99%
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	99%
Blast2go	Ubiquitin conserved site	IPR019954	-	99%
Blast2go	Ubiquitin supergroup	IPR019955	-	99%
Blast2go	Ubiquitin subgroup	IPR019956	-	99%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: warning!, putative chimeric sequence! or repetitive structureatg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 435 - 458

Fln protein: RRDLGCHSIFSRLRAPLLATRSQSSYLRSPLIATPSQGSLFTGLFH*LYTVFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQxxxIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF*

Protein Length: 436

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTCTCTCGCCTTCGCGCTCCTCTCTTAGCGACACGGTCACAGAGCTCGTATTTGCGCTCTCCTCTCATAGCGACACCGTCACAGGGCTCTTTGTTTACAGGTCTTTTTCATTAGCTTTATACCGTTTTCAAG_-_ATGCAGATCTTTGTTAAAACTCTCACTGGTAAGACGATCACCCTCGAGGTTGAAAGTTCTGACACTATTGACAATGTAAAGGCTAAGATCCAGxxxxxxxxxATTCCACCAGATCAACAGCGTCTGATCTTTGCCGGAAAGCAGCTAGAAGACGGCCGAACCCTAGCCGACTACAATATCCAGAAGGAATCTACCCTGCACCTCGTGCTTCGTCTGAGAGGTGGCATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACGATAACTTTGGAAGTTGAGAGCTCAGACACCATTGACAATGTTAAGGCCAAAATCCAGGACAAGGAAGGTATTCCACCTGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACACTTGCTGACTACAATATTCAGAAGGAATCCACCTTGCACCTTGTGCTCCGTCTGAGAGGTGGCATGCAGATATTTGTTAAAACCCTCACTGGGAAGACAATAACGTTGGAAGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGGATTCCCCCTGACCAGCAGCGTCTGATCTTTGCCGGAAAACAACTTGAAGACGGGCGAACACTTGCTGATTACAATATACAGAAGGAATCTACCCTGCATCTCGTCCTCCGTCTAAGGGGCGGCATGCAGATTTTTGTCAAAACCCTTACTGGAAAGACAATCACTTTAGAGGTTGAGAGCTCAGACACCATTGATAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATACCCCCTGACCAGCAGAGGCTTATCTTTGCCGGTAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGTGGCATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATTACATTGGAGGTGGAGAGTTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTCTGGCTGATTATAACATCCAGAAAGAGTCAACTCTGCACCTGGTGCTCCGACTTCGTGGTGGTAGTTTTTAATTTAAAGGCCGCCTTTTGGCATAGCCTCGCAGGGTCTCCATAAAGGATGTTTCTGTAGTAGGTGTCAGTCAGTATTTGTTTTTGTCTGTTGGATCTGTCATGGTTTTGATTTGTTTCTACGCAGTAGAACGAAATCATCACTGATCTCGTAGTTGGTACTGCAATGGCTACCATGCAAGTATTTAATTCTGTTTGGATACAAAGATACTATATCCGTTATACCCTAGGGATCAA

Fln Alignment:

sp_v1.1_unigene25331___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF
C0PSZ6_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
273	56	43			1.0
331	11		88		0.923564
335	88			11	0.923564
337	85	14			0.993533
339			14	85	0.993533
340	85			14	0.993533
341			14	85	0.993533
342	14	85			0.993533
343		85	14		0.993533
344	85			14	0.993533
350	85	14			0.993533
351	85	14			0.993533
1097	86	13			1.0
1098		86	8		0.999539
1102			8	91	0.999807
1106			91	8	0.999807
1109	91	8			0.999807
1110	91			8	0.999807
1111	91		8		0.999807
1112	91			8	0.999807
1114	8	91			0.999807
1115	91	8			0.999807
1117		8		91	0.999807
1362	83	16			0.994512
1373			50	50	1.0
1414		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain