SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25322

Length: 910 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25322

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EXL2; EXL2 (EXORDIUM LIKE 2)	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	phi-1-like protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphate-induced protein 1	IPR006766	-	0.0	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKI9

Fln msg: Separated hits, possible frame ERROR between 660 and 663, Distance to subject end: 49 aas, your sequence is shorter than subject: 257 - 307

Fln protein: MGGYKFLVWLLLLIDLCSSTMVERQPLVLSYHNGPLLTTAHAVDVHVIWYGRFTSSQRSIVGDFVQSLGASKAKEPSVHSWWKTTEGYSGAFNKSAAMATTTLGKQKLDDGYSLGKSLKRSHIAALVETAIVSGALPENGNAVYLVLTSDDVTMEGFCMSCGFHTSLSPTKNLxxPFAWVGNSEIQCPGQCAWPFHQPIYGPQTPPLVAPNGDMGIDGMIINIASVVAGAATNPFNTGYFQGDPAAPLEAVSTCPGI

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTATTGTTAAGCAGGCCGAGACTCCCCATATAAACGCCCAGTGGTTTCTGCTTTTCCATGCACCCAGCAGCATTAGAGTGTTAGAATAGTAGGGAGTATAAAAATTTGTAA_-_ATGGGAGGGTATAAATTTCTTGTATGGCTGCTGCTTCTGATTGATTTGTGTTCATCAACAATGGTGGAACGGCAGCCTCTTGTTTTAAGTTATCACAATGGTCCCCTTCTCACCACCGCACACGCCGTGGATGTCCACGTGATTTGGTACGGCAGATTCACTTCTTCTCAGCGTTCCATCGTGGGGGACTTTGTGCAGTCTTTGGGAGCCAGCAAGGCCAAGGAGCCGTCTGTGCATAGCTGGTGGAAAACCACTGAGGGATACAGTGGTGCATTCAACAAGTCCGCCGCAATGGCAACCACAACGCTGGGAAAGCAGAAGTTGGACGATGGCTATTCTCTTGGCAAGTCCCTGAAGCGCAGCCACATTGCGGCTCTGGTGGAAACGGCCATTGTTTCCGGAGCATTGCCGGAGAATGGCAATGCCGTGTATTTGGTTCTCACGTCCGATGATGTTACCATGGAGGGCTTCTGTATGAGCTGTGGATTCCATACTAGTCTCTCGCCGACAAAGAATCTTCTxxxGCCTTTTGCGTGGGTCGGGAACTCAGAAATTCAATGTCCAGGGCAATGCGCGTGGCCCTTCCATCAGCCAATCTACGGACCGCAGACTCCTCCTCTGGTGGCACCAAATGGCGACATGGGCATAGATGGGATGATCATCAACATTGCCAGCGTTGTTGCAGGGGCAGCCACTAATCCATTCAACACCGGCTACTTCCAAGGGGATCCTGCTGCACCTTTAGAGGCCGTGTCTACGTGCCCGGGAATATA

Fln Alignment:

sp_v1.1_unigene25322___MGGYKFLVWLLLLIDLCSSTMVERQPLVLSYHNGPLLTTAHAVDVHVIWYGRFTSSQRSIVGDFVQSLGASKAKEPSVHSWWKTTEGYSGAFNKSAAMATTTLGKQKLDDGYSLGKSLKRSHIAALVETAIVSGALPENGNAVYLVLTSDDVTMEGFCMSCGFHTSLSPTKNLLxPFAWVGNSEIQCPGQCAWPFHQPIYGPQTPPLVAPXXXXXXXXXXXXXASVVAGAATNPFNTGYFQGDPAAPLEAVSTCPGI
A9NKI9_______________MGGWKFLVCLLLLIDLCSSFLVEQQPLVLTYHNGPLLTTRPAVDVHVIWYGRFSPAQRSIVADFVQSLEASKATEPSVYSWWKTTERYSGRSNKAMPMANTRLGKQKLDAAYSLGKSLKRIHITALVDRAIASRALPVNSNAVYLVLTSDDVTVEGFCMSCGFHANIFPRKNFLxPYAWVGNSETQCPGQCAWPFHQPIYGPQTPPLVAPNGDMGIDGMIINVATVLAGAVTNPFNTGYFQGDAGAPLEAVSACPGM

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
86	66		33		0.997452
91		66	33		0.997452
96		66		33	0.997452
97	66		33		0.997452
100	66			33	0.997452
105		33		66	0.997452
108		33	66		0.997452
263	80			20	0.995493
265	80		20		0.995493
266		80		20	0.995493
270			80	20	0.995493
274	80	20			0.995493
284		20	80		0.995493
313	83		16		0.994512
314			83	16	0.994512
318	16			83	0.994512
321	83			16	0.994512
323		83	16		0.994512
327			83	16	0.994512
328		16	83		0.994512
329	16		83		0.994512
330		16	83		0.994512
331	83			16	0.994512
448	16	83			0.994512
494	16	83			0.994512
497			83	16	0.994512
503		83	16		0.994512
506		66		33	1.0
509	16	83			0.994512
518			16	83	0.994512
521		16	83		0.994512
527	83		16		0.994512
529		83	16		0.994512
533		83	16		0.994512
538		16		83	0.994512
543	16		83		0.994512
549		16		83	0.994512
603	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain