SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25220

Length: 734 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25220

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	96%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	72%
Blast2go	polcalcin jun o 2	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	55%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	55%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
266			10	90	0.90298
352	14	85			0.993533
445		85	14		0.993533
623	75		25		0.996473
672		26	73		1.0
692	84			15	1.0
693			84	15	1.0
700	21	78			1.0
717		18		81	0.999994
722		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
611	626	AATA AATA AATA AATA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain