SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25174

Length: 1754 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25174

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger CCCH domain-containing protein 14 n=2 Tax=Oryza sativa RepID=C3H14_ORYSJ	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	c3h14_orysj ame: full=zinc finger ccch domain-containing protein 14 short= 3h14	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	68%
Blast2go	K Homology domain	IPR004087	-	68%
Blast2go	K Homology domain, type 1	IPR004088	-	68%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P281

Fln msg:

Fln protein: MDPFGPPRKKLRPEVEFVNGNGGIHTHTHALTDVGTRRFNPPDIVYGDPARFKQPTFVSPEMESLPTGLGSKSKACTKFFSTSGCPFGENCHFMHYSPGGVNLISQVSNLGSGLRTASRNSTGPPTSILPPDQAAAVQPYKTRMCNRHGTAEGCRFGDKCHFAHSENELKKGNTLAPVEREWTSSYGRPVPGVLDGRPGGRLVQHEAKTPGMAAAASFGSSATAKISVDASLSGAIIGKGGVNSKQICRVTGVKLAIKDHESDSNLKNIELEGSFDQIKQASTMVHELIMQTRAVAAKPSGFVSNNFKTKLCENFSKGTCTFGDRCHFAHGASELR*

Protein Length: 338

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGAAATCCATTTATACATCGATCAATTTTAGTTACCCACATGTGCCTGCTCTTACCAGAGAGCTATGCGTAGCTTCATCGCTGATTATCGTATTTGAAATCGAGGCCAAGTTACTCTTGGTTTTTTTCTCACAAGCGTGAAGAAATCTGTTATTGTTGCAGTCTGTTCGTACCTTTTGTGAGCTCGTTCCGACTTTATCAGAGTTTCTTTTGTCCTTTTACCCTCGGAGAGATTGGAACGCGGGTTTGTGCGGTTTTATTGAGGCCTTGTGCTGCGTTAACAGGGCCTTCCTGTGTGTTTGGGTTTGAAGCTGTGACTGTTTGTGGGTTCTGCCCGATTTATCTGCTCAGAGAGAGGGAGAG_-_ATGGACCCATTTGGACCTCCGCGCAAGAAGTTGAGACCTGAGGTGGAGTTTGTGAATGGCAATGGTGGGATCCACACGCATACACATGCACTTACAGATGTGGGTACTCGGCGGTTCAACCCTCCTGACATCGTATATGGAGATCCCGCCAGATTCAAGCAGCCAACCTTTGTTTCTCCTGAAATGGAGTCGTTACCAACAGGTTTAGGAAGCAAATCAAAGGCATGCACCAAATTTTTCAGTACATCTGGTTGCCCATTTGGAGAGAACTGTCATTTCATGCACTATAGCCCTGGTGGTGTGAATTTGATTTCTCAGGTGTCAAATTTGGGAAGTGGTCTGCGCACAGCTTCAAGGAATTCAACAGGTCCCCCAACTAGCATTTTGCCTCCTGATCAGGCAGCTGCTGTACAGCCATACAAGACACGGATGTGCAATCGCCATGGGACTGCAGAAGGATGCCGGTTTGGAGATAAGTGTCATTTTGCCCACAGTGAAAATGAACTGAAGAAAGGTAATACACTTGCTCCTGTAGAGAGGGAATGGACAAGCTCTTATGGCAGGCCAGTTCCTGGTGTGTTAGATGGTAGGCCTGGAGGTAGACTTGTGCAGCATGAGGCTAAAACACCAGGAATGGCAGCGGCAGCTTCATTTGGTTCTTCAGCGACAGCAAAAATCAGTGTTGATGCTTCTCTCTCTGGTGCCATTATTGGAAAAGGTGGTGTAAACTCCAAGCAAATTTGTCGTGTAACTGGAGTAAAACTAGCCATAAAAGATCATGAATCTGATTCCAATCTAAAGAACATTGAGCTGGAAGGTAGCTTTGATCAGATAAAACAAGCAAGTACCATGGTTCATGAGCTGATAATGCAAACTAGGGCTGTAGCTGCAAAACCATCTGGGTTTGTTTCCAACAATTTCAAAACAAAGCTCTGTGAGAATTTTTCAAAGGGTACCTGCACATTTGGGGATCGTTGCCACTTTGCACATGGTGCCAGTGAACTTCGGTAA___TCCTCATTTTAGTCCTGTCTGCTAGACTTTGTTCGGCTGTTTGATAATATTTCAGTATACCATTTGACAATTTTTGAAGCATAGGGCTGTGCATTGACTAGATTGATGATAACATGCTATGTTAAATGCCACTGGACTTAACGAACTTAATTATCGCATGTTGTATTGTAGTATGCCATTTCTTTGAGTCTCAAAATCTGGTATTTCTTTTATATGGAGATATTCACCTATCCCGTGTTGATTTGTAGGCATTATAACAGATTTGTTTGTTTACCATAATTTTACATTGCAGTTTAGTTCCACGTCCTATGTTCTGGTATATCTGTTTTTACGTTGGTTTGTATTATTGAATG

Fln Alignment:

sp_v1.1_unigene25174___MDPFGPPRKKLRPEVEFVNGNGGIHTHTHALTDVGTRRFNPPDIVYGDPARFKQPTFVSPEMESLPTGLGSKSKACTKFFSTSGCPFGENCHFMHYSPGGVNLISQVSNLGSGLRTASRNSTGPPTSILPPDQAAAVQPYKTRMCNRHGTAEGCRFGDKCHFAHSENELKKGNTLAPVEREWT-SSYGRPVPGVLDGRPGGRLVQHEAKTPGMXXXXXXXXXXXXKISVDASLSGAIIGKGGVNSKQICRVTGVKLAIKDHESDSNLKNIELEGSFDQIKQASTMVHELIMQTRAVAAKPSGFVSNNFKTKLCENFSKGTCTFGDRCHFAHGASELR
A9P281_______________MDPFGPPRKKLRPDVEFVNGNGGIHTHTRTLTDVGTRGFNPPDIMYGDPARFKQPPIVPPEMESLPTGLRSKSKACTKFFSTSGCPFGENCHFMHYIPGGMNLISQVSNLGSGLGTASRKSTGPPTSILPSDQAAPVQPYKTRICNRYGTAEGCRFGDKCHFAHSENELKKGNTLAPVERERTLSSYGRPVPGVMDGRPGGRLVQREPTPPGMAAAASFGASATAKISVDASLAGAIIGKGGVNSKQICHATGAKLAIRDHESDSNLKNIELEGSFDQIKLASTMVHELIMQTSAVAAKPSGFVFNNYKTKVCENFSQGTCTFGDRCHFAHGASELR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
44		20		80	0.995493
45	80			20	0.995493
75		20	20		0.99255
77		80		20	0.995493
92	87		12		0.992554
209			50	50	1.0
256		33		66	1.0
263	33	66			1.0
329		33		66	1.0
345			50	50	1.0
404	80	20			0.995493
463	12		87		0.992554
543	12		87		0.992554
774	12			87	0.992554
987		12		87	0.992554
1007			87	12	0.992554
1008		87	12		0.992554
1009	87		12		0.992554
1010			12	87	0.992554
1052		11		88	0.923564
1053	11			88	0.923564
1054	11	88			0.923564
1055		11		88	0.923564
1056			11	88	0.923564
1060	11	88			0.923564
1079		14		85	0.993533
1193	90	9			0.999842
1195	86		4	9	0.999642
1197	86	4			0.999642
1664		83		16	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain