SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25152

Length: 723 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25152

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class IV chitinase n=5 Tax=Pseudotsuga menziesii RepID=C3VP99_PSEMZ	-	-	68%
FL-Next	tr=Class IV chitinase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	82%
Blast2go	class iv chitinase	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	86%
Blast2go	Chitin-binding, type 1	IPR001002	-	86%
Blast2go	Chitin-binding, type 1, conserved site	IPR018371	-	86%
Blast2go	Lysozyme-like domain	IPR023346	-	86%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
74	83	16			0.994512
75	83		16		0.994512
77		16		83	0.994512
78	83		16		0.994512
80			16	83	0.994512
82		16	83		0.994512
89		16	83		0.994512
90			83	16	0.994512
93		16		83	0.994512
95		16	83		0.994512
96		33		66	1.0
97		16		83	0.994512
98	16		83		0.994512
139			16	83	0.994512
221	16	83			0.994512
245	75		25		0.996473
260		75		25	0.996473
284			50	50	1.0
506		66		33	0.997452
511		33		66	0.997452
512			66	33	0.997452
515	33	66			0.997452
517		33		66	0.997452
518	33		66		0.997452
519	33		66		0.997452
523	33			66	0.997452
524		66	33		0.997452
528	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain