SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25116

Length: 1338 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25116

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lipase, putative	-	-	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	unknown [Picea sitchensis]	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, class 3	IPR002921	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLY7

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 446 - 617

Fln protein: VNNGEGNIRTDNKVFSAALKSNDEQPALVHQGALKLFLHIMENTDFQAKMQIYTDSKQRQLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPLCITFGCPLVGDAGLVEAVGRENWAGNFCHVVSKHDIVPRMFLAPFDSIAEPLIAILPYWQDIMVHGSKAVLHSSIQDACKTLLNNVLQYTHKVTNYGPESLRELGVIKRSPYRPFGTYMFCSGEGAACIDNSETVLKILHLTMQSYEKPYDNIVQDCFSEHVEYGSVLNHVIEKSISGRRSAKPDSESSDKMGLSLQLEAIGVGDQNDDAPVALHMARDIENKHNTNIAKLAIELSEKQCIMVELEWSKERCEKENALTYYDSFRKHEDIDTNLGRERLDGFWDEIIEMWKKHELPSDFQSQNKWINAGTAYRRLVEPLDIAYYYRMSQGKGNYLSNGRATRHKVLQTWIRK

Protein Length: 447

Fln nts: GTAAATAATGGAGAGGGCAACATACGAACTGATAACAAGGTCTTCTCTGCTGCCCTCAAGAGTAATGATGAGCAACCAGCCCTTGTCCATCAGGGAGCTCTTAAGCTGTTCCTACATATTATGGAGAATACTGATTTCCAAGCAAAGATGCAGATTTATACTGACTCAAAACAAAGGCAACTCAAACCCATTATATTTGTGGGTCATTCCTTAGGAGGGGCAGTTGCAACTTTGGCCACACTATGGGTACTGGAAAAGAGGCTCAGGCAAAGTTCCCCTTTGTGTATAACATTTGGATGTCCACTAGTGGGGGATGCAGGACTTGTTGAAGCTGTTGGTCGCGAAAATTGGGCAGGCAATTTTTGTCATGTGGTTTCCAAGCATGATATTGTTCCTCGAATGTTCCTTGCACCATTTGACTCAATCGCTGAACCCTTGATTGCTATCTTGCCTTACTGGCAAGACATAATGGTTCATGGCAGTAAAGCTGTACTTCATTCTTCTATTCAAGATGCTTGTAAAACTCTGCTCAATAATGTTCTCCAGTATACTCACAAAGTAACAAACTATGGGCCTGAGTCTCTGAGGGAATTAGGAGTTATCAAAAGAAGCCCATATAGACCTTTTGGCACTTATATGTTTTGTTCAGGCGAGGGTGCAGCTTGTATTGATAATTCTGAGACCGTTTTGAAGATTCTTCATTTGACAATGCAGAGCTACGAAAAGCCTTACGATAATATCGTACAGGACTGTTTTTCAGAGCATGTAGAGTATGGTTCTGTTTTGAATCATGTCATAGAAAAGTCCATAAGTGGGAGAAGAAGTGCAAAACCTGATTCAGAATCTTCTGACAAGATGGGACTGTCATTGCAGCTGGAAGCCATTGGTGTTGGTGATCAGAATGATGATGCACCAGTTGCCCTACACATGGCCAGGGATATTGAAAACAAGCATAACACAAACATTGCTAAGCTAGCAATTGAATTAAGTGAGAAACAATGTATTATGGTGGAGCTTGAGTGGTCTAAAGAGCGTTGTGAGAAGGAAAATGCCTTAACATATTATGATTCCTTCCGGAAACATGAGGATATCGATACTAATTTGGGAAGGGAAAGGCTGGACGGGTTTTGGGATGAGATTATTGAAATGTGGAAGAAACATGAGTTGCCCAGTGATTTCCAATCTCAAAATAAGTGGATAAACGCTGGCACTGCCTATAGGAGACTTGTGGAACCTCTGGATATTGCATATTATTACCGCATGTCTCAGGGTAAAGGCAATTATCTTTCAAATGGAAGAGCCACTCGCCACAAAGTTCTTCAGACATGGATAAGGAAA

Fln Alignment:

sp_v1.1_unigene25116___GEGNIRTDNKVFSAALKSNDEQPALVHQGALKLFLHIMENTDFQAKMQIYTDSKQRQLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPLCITFGCPLVGDAGLVEAVGRENWAGNFCHVVSKHDIVPRMFLAPFDSIAEPLIAILPYWQDIMVHGSKAVLHSSIQDACKTLLNNVLQYTHKVTNYGPESLREL-GVIKRSPYRPFGTYMFCSGEGAACIDNSETVLKILHLTMQSYEKPYDNIVQDCFSEHVEYGSVLNHVIEKSISGRRSAKPDSESSDKMGLSLQLEAIGVGDQNDDAPVALHMARDIENKHNTNIAKLAIELSEKQCIMVELEWSKERCEKENALTYYDSFRKHEDIDTNLGRERLDGFWDEIIEMWKKHELPSDFQSQNKWINAGTAYRRLVEPLDIAYYYRMSQGKGNYLSNGRATRHKVLQTWIRK
B8LLY7_______________GEGKIQTDNKVFSGCLKGNDDQPALVHQGALKLFLRIMENTDFQAKMQIYTDSKQRKLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPFCITFGSPLVGDVGLVEAVGCENWAGNFCHVVSTHDIVPRMLLAPIESIAEPLIAILPYWQDIMANDSKIVPDSFIQDACRTLLNNV--------NYGLDSVKELDGVIKKSPYRPFGTYMFCSGEGAACIDNSETVMKILHLTMQRHEKPYANIVQGCFSEHIEYGSVLNHVIEKSISGRRTEKPDSESSYEMGMSLQLEAIGVGAQNDDAPIALQIARDVENKHNTNVAKLTIELSEKQCIMAELEWYKERCEKEVGITYYDSFRKHKDVDANLCRVRLAEFWDKIIEMWERHELPSDFQSQNKWINAGTAYRRLVEPLDIAHYYRMCKGKGNYLSDGRPTRHKVLQKWMEE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
280		11		88	0.923564
439	85		14		0.993533
457		14		85	0.993533
515	14	85			0.993533
517			14	85	0.993533
519			14	85	0.993533
569	85		14		0.993533
741		80	20		0.995493
927	14	85			0.993533
968		80		20	0.995493
1021		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain