SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25063

Length: 1046 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25063

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=7 Tax=Pinaceae RepID=Q43021_PINBN	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	alcohol dehydrogenase	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	91%
Blast2go	GroES-like	IPR011032	-	91%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	91%
Blast2go	NAD(P)-binding domain	IPR016040	-	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0H5

Fln msg: Overlapping hits, possible frame ERROR between 305 and 269, Distance to subject end: 69 aas, your sequence is shorter than subject: 313 - 382

Fln protein: MASSTAGQVIKCKAAVAWGAGEPLKIEEVEVAPPQAMEVRIKVHYTALCHTDLxxxxxxxxxxxxxxILGHEAAGVVESVGEGVTDLKAGDSVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFLGTSTFSEYTVSHVGSVAKINPAAPLKKVCILSCGVSTGMGATLNVAKPKKGSTVAIFGLGGVGLSAAEGARIAGASRIIGIDLNSDRFEKAKLFGVTEFINPLDYKKPIQEVIAEKTDGGVDYSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATGPVNF

Protein Length: 314

Fln nts: GAAACATCGACGCTAAAGGCAAAAGTTAGTTAGTTTGTTTGTTTGTTCGGCACAATATAATATATTACATACGCTAGCAAGAAAATACCGTTTGGGCAGAAAGGAAA_-_ATGGCGAGCTCTACTGCAGGCCAGGTTATCAAATGCAAAGCTGCTGTTGCATGGGGAGCAGGGGAGCCTTTGAAGATTGAAGAAGTGGAAGTGGCTCCTCCACAGGCAATGGAAGTGAGAATCAAAGTTCATTATACTGCCTTGTGTCATACAGATCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCTTAGGACATGAAGCAGCTGGAGTTGTTGAGAGTGTTGGAGAAGGGGTGACTGACCTCAAAGCGGGTGACAGTGTGCTTCCCGTATTTACTGGAGAATGTGGAGAATGCAGACACTGCAAGTCGGAGGAGAGTAACATGTGTGATCTTCTAAGAATTAACACTGACAGAGGGGTTATGATAAATGATGGGAAGTCAAGGTTTTCAATCAATGGTAAACCGATTTACCACTTTCTTGGCACATCCACCTTCAGCGAGTATACAGTTTCGCATGTAGGTAGTGTGGCCAAGATAAATCCAGCGGCTCCTCTTAAGAAAGTCTGTATTCTTAGTTGTGGGGTATCAACAGGGATGGGTGCGACTTTGAATGTGGCCAAACCCAAGAAGGGTTCAACTGTAGCAATATTTGGCCTTGGGGGTGTTGGGCTCTCTGCTGCTGAAGGGGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAACAGTGACAGATTTGAAAAAGCAAAGCTCTTTGGTGTAACGGAATTTATAAACCCACTGGACTACAAGAAGCCTATTCAAGAGGTTATTGCCGAGAAAACTGATGGAGGGGTGGACTACAGCATCGAGTGCACAGGGAATGTCAAGGCCATGATTCAAGCCTTCGAATCCTGCCATGATGGTTGGGGTGTAGCCGTTTTAGTGGGTGTCCCTCATTCAGACGCAGTCTTTGCAACCGGCCCTGTGAATTTTC

Fln Alignment:

sp_v1.1_unigene25063___MASSTAGQVIKCKAAVAWGAGEPLKIEEVEVAPPQAMEVRIKVHYTALCHTDLYxxxxxxxxxxxxRILXXXXXXXXXXXXXXXTDLKAGDSVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFLGTSTFSEYTVSHVGSVAKINPAAPLKKVCILSCGVSTGMGATLNVAKPKKGSTVAIFGLGGVGLXXXXXXXXXXXXXXXXXDLNSDRFEKAKLFGVTEFINPLDYKKPIQEVIAEKTDGGVDYSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATGPVNF
A9P0H5_______________MPSSTAGQVIKCKAAVAWGAGEPLKIEEVEVAPPQASEVRIKVHYTALCHTDLYxxxxxxxxxxxxRILGHEAAGIIESVGEGVTDLKVGDTVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFLGTSTFSEYTVAHVGCVAKINPEAPLDKVCILSCGVSTGMGATLNVAKPKKGSTVAIFGLGGVGLAAAEGARIAGASRIIGIDLNSDRFEKAKLFGVTEFINPKDHEKPIQEVIAERTDGGVDSSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATSPTHF

SSRs (tot: 1)

Start position	End position	Sequence	Length
33	47	GTTT GTTT GTTT GTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain