SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25018

Length: 1297 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25018

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	microsomal glutathione s-transferase, putative (EC:2.5.1.18)	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	microsomal glutathione s-	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	membrane	GO:0016020	Cellular Component	77%
Blast2go	vacuole	GO:0005773	Cellular Component	77%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS82

Fln msg:

Fln protein: MAVDLPPAFGWVVLAIVAYSVLNVWMAIQVGKARKRYNVPYPKLYAIESENKDANMFNCIQRGHQNCLENMPVFFVVLILGGLQHPIASAIFGMLYTVARYFYFTGYSTGDPKNRLTYGKYNAVGMLGLLFCTLSLAWHLLFKAPNYE*

Protein Length: 150

Fln nts: ATGGGGACCTGCAATATTTCTTGCCTTGGGGACAAAGGCACTGAGAAATCTCTGACTAAATCAAACCGGAAGAGCAGCTGCATCCCTATATATATATTTCTTGCCTTGGGGACAAAGGCACTGAGAAATCTCTGACTAAATCAAACCGGCAAAGCAGCTGCATCCATATATGTATAGAAGTCTAAGTCAGTGTATTGGGTGAGATCCTTCTTTGGTTTTCTGAAATTTGGCTATCACACAACAAGCGCAGCTACACGAAGAATCCCCGATTTTCTGAATTCGTGCGTGATAGGTTTGGTAGGTGAAGCTACAGGG_-_ATGGCGGTTGATTTACCTCCTGCCTTTGGGTGGGTAGTCTTGGCTATTGTGGCATATTCAGTGCTCAATGTCTGGATGGCCATTCAGGTCGGAAAGGCTAGAAAACGATATAATGTCCCTTACCCGAAATTGTATGCCATTGAAAGTGAGAACAAGGATGCAAACATGTTCAACTGTATTCAGCGAGGACATCAGAACTGTCTGGAGAATATGCCTGTATTCTTTGTGGTCCTCATTTTGGGTGGCTTACAGCACCCGATAGCCTCCGCCATTTTCGGTATGTTGTATACTGTTGCACGGTATTTCTACTTCACAGGCTATTCAACAGGAGATCCAAAAAATAGATTGACTTACGGGAAATATAACGCTGTTGGCATGTTGGGATTGCTGTTCTGCACTCTATCATTGGCATGGCATCTTTTGTTTAAAGCCCCCAACTATGAATAG___AAGCAGCTTATGTCAAATACCAGGCAGGCCCACAAATTTTCCCAAGGAAAGGAAACTCTGTTCCTGTTAGTTACTCTTTTGTTAGTTCCCAAGATAATGGTTTTTCATTGAATTGTGATTAGTTTAATCATTGGAACTGAAGCCTGCTCATTTTCAGGATCTGCAGCTTAGAGCTATGCATAGCTCATTATGACTTGCACTCCTTGTAGCTGCACTACAATTTAGCTTTTAGAATGGGGTGATTAAGCTCCAACAATTATTTTATTTTCAACAGATTAGCTAATTGAACTATGCATAGTTCACTGTAACTTTGAAGGTTAAAGTGACATTTTTGATAAAGAAGAATAATTATTGTGAAAAATTTTCAAACCATATTTCAGAACAATTTGCCCATCAAGCCTCGGCTCAAATTCACACACATCTGATCGTCAGCATATAGTGCTTGCCCTTTCTTTGAGTAATGCTTTCAAAGCGAGTTGAGGTTACTTTTAATGGGGAACTCTTTAGTATTTGCTTCCTATGTATTTCCTAATAG

Fln Alignment:

sp_v1.1_unigene25018___MAVDLPPAFGWVVLAIVAYSVLNVWMAIQVGKARKRYNVPYPKLYAIESENKDANMFNCIQRGHQNCLENMPVFFVVLILGGLQHPIASAIFGMLYTVARYFYFTGYSTGDPKNRLTYGKYNAVGMLGLLFCTLSLAWHLLFKAPNYE
A9NS82_______________MAVDLPPAFGWVVLTAVAYGVLNVWMSIQVGKARKRYNVPYPKLYAIESENKDANLFNCVQRGHQNCLEVMPVFFLFLILGGLQHPIASSIFGVVYSVGRFFYFTGYSTGVPKNRLTYGKYNMLGLLGLMFCTLSLAWHLLFKAPNHE

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
116	83		16		0.994512
117	83		16		0.994512
118	83		16		0.994512
120	12		87		0.992554
121		75	12	12	0.975346
122	62		37		1.0
123		87	12		0.992554
124			12	87	0.992554
151			88	11	0.923564
152	44	55			1.0
153	88			11	0.923564
154	44		55		1.0
156		11	88		0.923564
158	88		11		0.923564
167	11	88			0.923564
168	55	44			1.0
199		11	88		0.923564
212		62	37		1.0
217	37	12	50		1.0
227	75		25		1.0
249	20		80		0.995493
266		80		20	0.995493
323		40	60		1.0
377	20	80			0.995493
379		80		20	0.995493
388			80	20	0.995493
411	20	80			0.995493
419	20		80		0.995493
434		80	20		0.995493
452		75		25	0.996473
458		25		75	0.996473
1168	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain