SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24988

Length: 2065 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24988
ATGGGGGTTGCCCTCGGAAACCCCACCCGATCGACGGTGCAGTTCATCTCCCGCGATCAGACGGTGGCGCTTTTCTCGGGGTTTCCTCTTCTCCGAATTGCTAAGGGATTGCCCTCATTTGGCTATGCAGCGCTCCCGCGGAGCCTGCTCTGATGCAGCCATTCCTTCAACAGCTCTGTTTTTTGGTTGTTCAGAAATTCCTTGATGAAGTCTGCTCCGTTCCAACCTCACGGCCTGGCAGTGGTCCAAATTGTTTACAGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAGCGACGGACTTCACCTGTTACGGTCTTGAAGGATTCAAGAAATTCGAGTTGCGTGAAAGAATGGCCGGCTTAGATAATGGGGTAGGTAATGGTATCGTGTCTGTGAAATTCACCAAACTCTTTATTGATGGAAAATTTGTGGACGCAATTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACGCGCGTCGCAGAAGGTGATAAGGAGGATGTGGATTTGGCTGTGAAGACGGCCCGGGAGGCTTTCGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAATAGGTACGCTGATTTGGTAGAGCAGCATATAGATGAACTAGCACCTCTTGAAACCCTAGATAATGGAGAACCACTCACGCTTACTCGTGTCATTGTGACCGGGTGTATCCAGATTCTCAGATACTATGCAGGAGCGGCTGATAAAATACATGGGGAAACATTAAAAATGGGAGGGCAATATCAGGCATATACTTTGCATGAGCCTATTGGAGTGGTCGGTCAGATTATACCATGGAACTTCCCACTTTTCATGTTTTTCATGAAAATCTCTCCAGCTTTGGCTTGTGGATGCACTATAGTTATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGTGCACATCTGGCCAAGGAGGCAGGGCTTCCATCTGGAGTTCTTAATGTGATAACTGGTTTTGGAGAAACGGCTGGTGCTGCAATAAGCAACCATATGGATATTGACAAGGTCGCCTTTACAGGGTCTACTGATATAGGTCGGGTTATCATGGTGGCTGCTGCCCAGAGCAACTTGAAACCTGTAACCCTTGAACTTGGGGGAAAATCTCCGTTGATTATCATGGATGACGCTGATATTGAGGAGGCCGTGAATCTTGCCCACAAGGCCATATTTTTTGGCAGTGGACAAGTATGCTGCGCAGGATCCCGGATATATGTTCAAGAGGGCATCCACGATAAATTTGTGAAGAGAGTAGTGGAAAGAGCGAAGAAACAGGTGGTCGGCGATCCTTTCAACCCAGAAGTTGACCATGGTCCTCAGATTGACAAGACACAATTTGAGAAAATATTAGAATACATTGAGCATGGGAAGCGAGAAGGAGCAAAACTATTGACAGGCGGTAGTCGCGTGGGTGAGAAAGGATTTTACATTGAACCAACCATTTTCTCCCATGTGCAGGAGGACATGAAGATTGGGAAAGAAGAAATATTTGGACCAGTCATGTCCATTTTCAAGTTCAGGACCATTGAAGAAGCCATAGAACTGGGCAATAAAACAATATATGGTTTAGCTGCTGGAATTGTGTCGAAGAATATAGATACAGTAAATAGGATTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTTAACTGCTACCACGTAGTATTTCCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGGATCGGTAGAGAGCAGGGTCTCGATGTTCTTAAAAATTATTTGCAAGTCAAGTGTGTCATAACTCCTCTCCATGATTCACCTTGGTTGTAGAACTATGCTTTAACCTCTATCAAATGTGTTTGTCAAATGCTTCACAGCTTTATATAGTTAGGTTGAAGCTTCAATAAATTTTTGTATGTAATCACTTGAGCCAATGATGTCATTTCCTTCACATGAATTCCTTATAATATTTATGTATCAAATTAGTCATTACATTTACATGGTTTTTATTTAAATAATTATACATAT

Ace file of the UniGene sp_v1.1_unigene24988

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LRE9_ORYSJ	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Aldehyde dehydrogenase domain	IPR015590	-	80%
Blast2go	Aldehyde dehydrogenase, conserved site	IPR016160	-	80%
Blast2go	Aldehyde/histidinol dehydrogenase	IPR016161	-	80%
Blast2go	Aldehyde dehydrogenase, N-terminal	IPR016162	-	80%
Blast2go	Aldehyde dehydrogenase, C-terminal	IPR016163	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg:

Fln protein: MAGLDNGVGNGIVSVKFTKLFIDGKFVDAISGKTFETLDPRTGDLITRVAEGDKEDVDLAVKTAREAFDKGPWPRMSGYERGRFLNRYADLVEQHIDELAPLETLDNGEPLTLTRVIVTGCIQILRYYAGAADKIHGETLKMGGQYQAYTLHEPIGVVGQIIPWNFPLFMFFMKISPALACGCTIVIKPAEQTPLTALYCAHLAKEAGLPSGVLNVITGFGETAGAAISNHMDIDKVAFTGSTDIGRVIMVAAAQSNLKPVTLELGGKSPLIIMDDADIEEAVNLAHKAIFFGSGQVCCAGSRIYVQEGIHDKFVKRVVERAKKQVVGDPFNPEVDHGPQIDKTQFEKILEYIEHGKREGAKLLTGGSRVGEKGFYIEPTIFSHVQEDMKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKNIDTVNRISRSIRAGVIWVNCYHVVFPDAPFGGYKMSGIGREQGLDVLKNYLQVKCVITPLHDSPWL*

Protein Length: 499

Fln nts: ATGGGGGTTGCCCTCGGAAACCCCACCCGATCGACGGTGCAGTTCATCTCCCGCGATCAGACGGTGGCGCTTTTCTCGGGGTTTCCTCTTCTCCGAATTGCTAAGGGATTGCCCTCATTTGGCTATGCAGCGCTCCCGCGGAGCCTGCTCTGATGCAGCCATTCCTTCAACAGCTCTGTTTTTTGGTTGTTCAGAAATTCCTTGATGAAGTCTGCTCCGTTCCAACCTCACGGCCTGGCAGTGGTCCAAATTGTTTACAGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAGCGACGGACTTCACCTGTTACGGTCTTGAAGGATTCAAGAAATTCGAGTTGCGTGAAAGA_-_ATGGCCGGCTTAGATAATGGGGTAGGTAATGGTATCGTGTCTGTGAAATTCACCAAACTCTTTATTGATGGAAAATTTGTGGACGCAATTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACGCGCGTCGCAGAAGGTGATAAGGAGGATGTGGATTTGGCTGTGAAGACGGCCCGGGAGGCTTTCGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAATAGGTACGCTGATTTGGTAGAGCAGCATATAGATGAACTAGCACCTCTTGAAACCCTAGATAATGGAGAACCACTCACGCTTACTCGTGTCATTGTGACCGGGTGTATCCAGATTCTCAGATACTATGCAGGAGCGGCTGATAAAATACATGGGGAAACATTAAAAATGGGAGGGCAATATCAGGCATATACTTTGCATGAGCCTATTGGAGTGGTCGGTCAGATTATACCATGGAACTTCCCACTTTTCATGTTTTTCATGAAAATCTCTCCAGCTTTGGCTTGTGGATGCACTATAGTTATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGTGCACATCTGGCCAAGGAGGCAGGGCTTCCATCTGGAGTTCTTAATGTGATAACTGGTTTTGGAGAAACGGCTGGTGCTGCAATAAGCAACCATATGGATATTGACAAGGTCGCCTTTACAGGGTCTACTGATATAGGTCGGGTTATCATGGTGGCTGCTGCCCAGAGCAACTTGAAACCTGTAACCCTTGAACTTGGGGGAAAATCTCCGTTGATTATCATGGATGACGCTGATATTGAGGAGGCCGTGAATCTTGCCCACAAGGCCATATTTTTTGGCAGTGGACAAGTATGCTGCGCAGGATCCCGGATATATGTTCAAGAGGGCATCCACGATAAATTTGTGAAGAGAGTAGTGGAAAGAGCGAAGAAACAGGTGGTCGGCGATCCTTTCAACCCAGAAGTTGACCATGGTCCTCAGATTGACAAGACACAATTTGAGAAAATATTAGAATACATTGAGCATGGGAAGCGAGAAGGAGCAAAACTATTGACAGGCGGTAGTCGCGTGGGTGAGAAAGGATTTTACATTGAACCAACCATTTTCTCCCATGTGCAGGAGGACATGAAGATTGGGAAAGAAGAAATATTTGGACCAGTCATGTCCATTTTCAAGTTCAGGACCATTGAAGAAGCCATAGAACTGGGCAATAAAACAATATATGGTTTAGCTGCTGGAATTGTGTCGAAGAATATAGATACAGTAAATAGGATTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTTAACTGCTACCACGTAGTATTTCCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGGATCGGTAGAGAGCAGGGTCTCGATGTTCTTAAAAATTATTTGCAAGTCAAGTGTGTCATAACTCCTCTCCATGATTCACCTTGGTTGTAG___AACTATGCTTTAACCTCTATCAAATGTGTTTGTCAAATGCTTCACAGCTTTATATAGTTAGGTTGAAGCTTCAATAAATTTTTGTATGTAATCACTTGAGCCAATGATGTCATTTCCTTCACATGAATTCCTTATAATATTTATGTATCAAATTAGTCATTACATTTACATGGTTTTTATTTAAATAATTATACATAT

Fln Alignment:

sp_v1.1_unigene24988___VSVKFTKLFIDGKFVDAISGKTFETLDPRTGDLITRVAEGDKEDVDLAVKTAREAFDKGPWPRMSGYERGRFLNRYADLVEQHIDELAPLETLDNGEPLTLTRVI-VTGCIQILRYYAGAADKIHGETLKMGGQYQAYTLHEPIGVVGQIIPWNFPLFMFFMKISPALACGCTIVIKPAEQTPLTALYCAHLAKEAGLPSGVLNVITGFGETAGAAISNHMDIDKVAFTGSTDIGRVIMVAAAQSNLKPVTLELGGKSPLIIMDDADIEEAVNLAHKAIFFGSGQVCCAGSRIYVQEGIHDKFVKRVVERAKKQVVGDPFNPEVDHGPQIDKTQFEKILEYIEHGKREGAKLLTGGSRVGEKGFYIEPTIFSHVQEDMKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKNIDTVNRISRSIRAGVIWVNCYHVVFPDAPFGGYKMSGIGREQGLDVLKNYLQVKCVITPLHDSPWL
B8LLF5_______________VTVKYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVDKAVNIAHLAVYTNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDPFQPGVQHGPQIDKMQFEKILKYIQYGKRDGANLVLGGNSLGNKGFYIEPTIFSDVEDDMQIAKEEIFGPIMSILKFKTIEEVIERGNKTIYGLGAGIITKDIDIANRLARSLRVGTVWINCYLVVGADVPLGGYKMSGIGREYGSYGLTNYLQVKCVISPLQHSPWL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
350		85		14	0.993533
352	71		28		1.0
359		77	22		0.999999
385		22		77	0.999999
440		20		80	0.999996
447	80		20		0.999996
458		80		20	0.999996
485	20			80	0.999996
518		83	16		0.999991
530		16		83	0.999991
780		90	10		0.90298
784	10		90		0.90298
786			88	11	0.923564
787	88		11		0.923564
792			14	85	0.993533
794	71		14	14	0.984337
795	83	16			0.994512
796	83	16			0.994512
798	83	16			0.994512
801	16		83		0.994512
804		16	83		0.994512
805			83	16	0.994512
946	75		25		0.996473
1021		25		75	0.996473
1159	28		71		1.0
1373		20	80		0.995493
1508	11		88		0.923564
1723		12		87	0.992554
1733		85		14	0.993533
1735		85		14	0.993533
1737		14		85	0.993533
1739			85	14	0.993533
1741	83			16	0.994512
1742			16	83	0.994512
1743	16			83	0.994512
1745		80		20	0.995493
1780	16		83		0.994512
1887		25		75	0.996473
1915		87		12	1.0
1971		10		90	0.90298
1977	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain