SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24946

Length: 733 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24946

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	98%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	polcalcin jun o 2	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	56%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	56%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
427		16		83	0.994512
508		82		17	1.0
569		31	68		1.0
625		70	30		1.0
634		50	50		1.0
640	20		80		0.999996
641	80	20			0.999996
663	72			27	1.0
677		57		42	1.0
679	14		85		0.993533
701	40		60		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
605	620	AATA AATA AATA AATA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain