SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24933

Length: 1434 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24933

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Jasmonate ZIM-domain protein 1 n=1 Tax=Solanum lycopersicum RepID=A7XXZ0_SOLLC	-	-	8.0e-12	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	jasmonate zim-domain protein 1	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tify	IPR010399	-	0.0	66%
Blast2go	CO/COL/TOC1, conserved site	IPR018467	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ92

Fln msg: your sequence is shorter than subject: 250 - 269

Fln protein: MSPQASVAFKIIHVQNASEANGRVMKDSKYGLEFGPEKHQAKTRLVMQHLSRIKPEMMLKLLSSNQQSEGKKVEIMELFPLSTGFGSNPRVTESNISLPSEIGLTNPNSSRFVEAQVPEKISTSQFTIFYNGEVNVYDMPAQKVQDIMKLASANSSSNKTTSKITSGKIEETSGQQPSKSALNAVNENQPQKVAAGLEIVKKLSLQRFLQKRKERLNSVAPYSTVETATLPSKAAKDSDEKITLSLGCR*

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGCGTATAGCTTAAGGAAAAGGGTCGATTGCAGTGGATCTTTGGTGATTTATCGGAACAATATTTGAGTTTGCAAGCT_-_ATGTCGCCACAGGCATCTGTGGCTTTCAAGATTATACACGTTCAAAACGCCTCTGAAGCTAACGGAAGAGTAATGAAGGACAGTAAATATGGCTTGGAATTCGGTCCTGAGAAACACCAAGCCAAGACGAGATTAGTCATGCAACATCTGTCGCGGATAAAACCTGAGATGATGCTAAAGTTGCTTTCATCGAACCAACAGTCAGAGGGCAAGAAGGTTGAAATTATGGAATTGTTTCCATTAAGCACCGGTTTCGGTTCAAACCCAAGAGTTACAGAATCAAATATAAGCCTGCCTTCGGAAATCGGCCTCACTAATCCAAATTCCAGCCGGTTCGTTGAAGCACAAGTGCCGGAGAAAATATCCACATCTCAATTCACTATTTTCTATAACGGAGAGGTGAATGTTTACGATATGCCTGCTCAGAAGGTTCAAGACATTATGAAGCTTGCAAGCGCCAATAGCTCGAGCAACAAAACAACATCTAAGATTACCAGCGGCAAAATTGAAGAGACATCGGGACAGCAGCCTTCCAAATCTGCATTGAACGCTGTGAATGAAAATCAACCTCAAAAAGTGGCAGCAGGCTTGGAAATAGTGAAGAAATTATCTCTGCAACGCTTCCTCCAAAAGCGAAAGGAGAGATTGAACAGCGTGGCTCCTTACAGCACAGTGGAGACGGCGACATTGCCTTCGAAAGCAGCGAAGGATTCCGATGAGAAGATCACACTGTCGTTGGGTTGTCGGTGA___CAGCAAATAAATGTCGGTGGATGCTATTGACCTCTAATTACATCCAGTGGGAATTATTTTCCCTTCAACGATCTGTTATTCTCGCCCTTCTAATCGAGGGAACGCACGTGCTTTTGTACAGCCGATGACGGCAACGGGTTTTCCGTATTGCGGAGCGTGAGTAGACTGTGACAGGTGAAGCTGACCGGGCAGAGGAAAGCGCAACTTGCAACGTCAAGGTAACTTCGTCGCAAGTGGCATGCAATTTCTTCATTGCACCACAGCAGGCATGCAGCAAATATTAATTCAAATCCTGTCCTGCACCGCCACTAGGGATGTATTATATTTTATATTGTAATACGTTTAAATCTTTCCAAAGTTAAAATATTTACTAAAGTTATTTCAAGTCGGTGGACAATGGATTCAGCGACTACTTTTATCATCAGGAACCACTTCACGCTACATCACCAAAAGAAAATATATTATTTCACAATTCTGTTGATTTAAAAAAAAGTATGTTAAACGCACATGTTGTTGGAATCATGGGGTGCACACATTGATGTTACGTTAGTTTCAAAGTAATATAATTTGATAATCCTTC

Fln Alignment:

sp_v1.1_unigene24933___MSPQASVAFKIIHVQNASEANGRVMKDSKYGLEFGPEKHQAKTRLVMQHLSRIKPEMMLKLLSSNQQSEGKKVE----------------------IMELFPLSTGFGSNPRVTESNISLPSEIGLTNPNSSRFVEAQVPEKISTSQFTIFYNGEVNVYDMPAQKVQDIMKLXXXXXXXXXXXXXITSGKIEETSGQQPSKSALNAVNENQPQKVAAGLEIVKKLSLQRFLQKRKERLNSVAPYSTVETATLPSKAAKDSDEKITLSLGC
A9NQ92_______________MSPSASVAFEYLRFQNASEANETVLNGSN-SLEFSPGKHQAKPRL-MQDLSRIKPQMMLKLLSSNKLSEDTKLDFAHVNRQAEGFNKQSEATSHAKMIELFPVSTGFGSDPRVTETKITLPLEIGLTDPNSSRCVLAEVPAKPSTAQLTIFYNGAVNVYDMPAEKAQEIMKLASANSSSNTRISTITSSKIEQILQHQPSKPALNAINENQPQRLAVGMEIVMKLSLQRFLQKRKERLNSVAPYSTMETETSPWKAGKDSDDQIILSLGC

SNPs (tot: 95)

Position	A %	C %	G %	T %	Probability
36		75	25		0.996473
39	75	25			0.996473
46	80		20		0.999996
53	80		20		0.999996
105	80		20		0.999996
108	20			80	0.999996
116			80	20	0.999996
136		20		80	0.999996
138	80	20			0.999996
143		80		20	0.999996
159		20	80		0.999996
166	80	20			0.999996
167	20	80			0.999996
173	50			50	1.0
195	20		80		0.999996
197		80		20	0.999996
215	33		66		1.0
313	10		90		0.90298
349		16	83		0.994512
350	50	50			1.0
359		83		16	0.994512
364		80		20	0.995493
365	60	40			1.0
379		80		20	0.995493
396		85		14	0.993533
425	20		40	20	1.0
426	40			60	1.0
427	40			60	1.0
432	80	20			0.995493
438		40		60	1.0
445	80			20	0.995493
450		80	20		0.995493
459			75	25	0.996473
460	75	25			0.996473
462	75			25	0.996473
463	75		25		0.996473
465	50	50			1.0
466		25		75	0.996473
467	66			33	0.997452
469		75	25		0.996473
470		75	25		0.996473
475		75	25		0.996473
477		75		25	0.996473
480		25		75	0.996473
487		20		80	0.995493
488			20	80	0.995493
490		20		80	0.995493
491		50	50		1.0
494		25		75	0.996473
495	75	25			0.996473
496	75			25	0.996473
497		75		25	0.996473
500	75	25			0.996473
503		25	75		0.996473
504	25		75		0.996473
506		25	75		0.996473
522		75		25	0.996473
530		25	75		0.996473
537		25	75		0.996473
555	25		75		0.996473
556		50		50	1.0
557	25	75			0.996473
558	75	25			0.996473
561			25	75	0.996473
571		75	25		0.996473
580	75			25	0.996473
583		25	75		0.996473
585	50		25		0.995533
589		50	50		1.0
600	50			50	1.0
619		50		50	1.0
622	25	75			0.996473
659		25	75		0.996473
694	25			75	0.996473
729		66		33	1.0
765			40	60	1.0
777	80		20		0.995493
790	87			12	0.992554
809		83	16		0.994512
825		16	83		0.994512
826	83	16			0.994512
833		50		50	1.0
900		80	20		0.995493
1077	40		50		1.0
1082	30		70		1.0
1094	90	10			0.90298
1096			90	10	0.90298
1097		90	10		0.90298
1098	90		10		0.90298
1099	90	10			0.90298
1101			10	90	0.90298
1104	10			90	0.90298
1150	25		75		1.0
1238		25		75	0.996473
1248		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain