SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24930

Length: 491 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene24930
CGTCGTGACCTTGGCTGTCACTCAATGGGTATCAATGCCTGAGGCCTGTGAACAACATCAATTTGAATATGGATGCGAAAGCTGCAGATGGCCATGTTGGAGGAATACGTGATGGAAATGAACTCATTCTCTTTGAGTGGAAGAAACAGAGCAACCAGAAATGGAAGCTTCAGCCAATCCATTAGGGATGTATAGTGTCAGCAATGCCTTGATCTGTATTACCAGAAAAGGATGTACAGTATTAGCTATGTCTTCGTCTGTATTACCAGAAAAGGATGTAGAGCATTAGCTATATCATCGCCTAAATTACCAGAAAAGAATGTACAGCGTTAGCAATGCCCTTGTCTGTATTACCAGAAAAAAAAGATGTACAATCTTAGTAATGTACTTGGTCTGTTTTCAATGCAATTGGCGATGATGGACAGTATTAGTAAAAGTTGCATATCCTCCGAGGATCTTGTTTTTTGACCTTAACATTACTGATATGAGTT

Ace file of the UniGene sp_v1.1_unigene24930

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Stress responsive protein n=2 Tax=Pooideae RepID=Q4U0C9_WHEAT	-	-	2.0e-10	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	unknown [Picea sitchensis]	-	-	5.72829e-25	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSY5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 61 - 361

Fln protein: S*PWLSLNGYQCLRPVNNINLNMDAKAADGHVGGIRDGNELILFEWKKQSNQKWKLQPIH*

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGGTATCAATGCCTGAGGCCTGTGAACAACATCAATTTGAATATGGATGCGAAAGCTGCAGATGGCCATGTTGGAGGAATACGTGATGGAAATGAACTCATTCTCTTTGAGTGGAAGAAACAGAGCAACCAGAAATGGAAGCTTCAGCCAATCCATTAG___GGATGTATAGTGTCAGCAATGCCTTGATCTGTATTACCAGAAAAGGATGTACAGTATTAGCTATGTCTTCGTCTGTATTACCAGAAAAGGATGTAGAGCATTAGCTATATCATCGCCTAAATTACCAGAAAAGAATGTACAGCGTTAGCAATGCCCTTGTCTGTATTACCAGAAAAAAAAGATGTACAATCTTAGTAATGTACTTGGTCTGTTTTCAATGCAATTGGCGATGATGGACAGTATTAGTAAAAGTTGCATATCCTCCGAGGATCTTGTTTTTTGACCTTAACATTACTGATATGAGTT

Fln Alignment:

sp_v1.1_unigene24930___NGYQCLRPVNNINLNMDAKAADGHVGGIRDGNELILFEWKKQSNQKWKLQPIH
C0PSY5_______________NGYQCLRPVNNINLNMDAKAADGHVGGIRDGNELILFEWKKQSNQKWKLQPVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain