SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24915

Length: 371 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene24915
AGGGGGATACATTGAAGAGCGTTTCAACCATCATGGCAAAAACCAGCTACTCTTTGGCAACAATATTACTCATCATAATTCTGCTGGTGCAGGTTTATGCAGACGTCGCCATTACCACCAGCCAGAATGATATAGAGAACCACGGGGTAATAATACTGGGCTCACAGTTAACCGTATTTCTCTTACCGCAGACAAATAATGAAAAATTCAGTCCACGGCCCCATATTGATTGTGTTTCTCTGTGCAAGCATAGATGTTCCAAGGCATCGGAGCCCAAGATCTGTACGAAGGGCTGTGAAATATGCTGTGCAAAATGCAAATGCGTACCTTATGGGAGCATTAAAGATACGTGTCCCTGCTATAGCAATTGG

Ace file of the UniGene sp_v1.1_unigene24915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gibberellin-regulated protein 2	-	-	5.0e-11	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	predicted protein [Arabidopsis lyrata subsp. lyrata]	-	-	6.2182e-11	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gibberellin regulated protein	IPR003854	-	6.2182e-11	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH2

Fln msg: STOP codon was not found. Distance to subject end: 10 aas,

Fln protein: MAKTSYSLATILLIIILLVQVYADVAITTSQNDIENHGVIILGSQLTVFLLPQTNNEKFSPRPHIDCVSLCKHRCSKASEPKICTKGCEICCAKCKCVPYGSIKDTCPCYSNW

Protein Length: 114

Fln nts: AGGGGGATACATTGAAGAGCGTTTCAACCATC_-_ATGGCAAAAACCAGCTACTCTTTGGCAACAATATTACTCATCATAATTCTGCTGGTGCAGGTTTATGCAGACGTCGCCATTACCACCAGCCAGAATGATATAGAGAACCACGGGGTAATAATACTGGGCTCACAGTTAACCGTATTTCTCTTACCGCAGACAAATAATGAAAAATTCAGTCCACGGCCCCATATTGATTGTGTTTCTCTGTGCAAGCATAGATGTTCCAAGGCATCGGAGCCCAAGATCTGTACGAAGGGCTGTGAAATATGCTGTGCAAAATGCAAATGCGTACCTTATGGGAGCATTAAAGATACGTGTCCCTGCTATAGCAATTGG

Fln Alignment:

sp_v1.1_unigene24915___QTNNEKFSPRPHIDCVSLCKHRCSKASEPKICTKGCEICCAKCKCVPYGSI--KDTCPCYSN
A9NKH2_______________QTNGMNRSLLQTIDCNAACGQRCKEASRHKVCLRACGTCCAKCNCVPPGTSGNKDVCPCYAS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
147		66	17		1.0
149		3	78		1.0
150		62	4	13	1.0
151	77	3			1.0
152			62	19	1.0
154	19	61			1.0
155	44		5	45	1.0
157	96	3			0.991164
158	2		27	70	1.0
160	40	59			1.0
163	21		78		1.0
164	21		78		1.0
165	18	78		3	1.0
166	16			83	1.0
167		89		10	1.0
168	89			10	1.0
173		7		92	0.999532
174	92	7			0.999602
193		75	25		1.0
224	6	93			0.999453
225		93		6	0.999453
226		93	6		0.999453
227	93		6		0.999453
228			7	92	0.999532

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain