SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24911

Length: 686 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24911

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Male-cone protein 1 n=1 Tax=Pinus radiata RepID=MC1_PINRA	-	-	6.0e-30	93%
FL-Next	sp=Male-cone protein 1; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	93%
Blast2go	mc1_pinra ame: full=male-cone protein 1 ame: full=prmc1 flags: precursor	-	-	1.04153e-29	98%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	1.04153e-29	98%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	1.04153e-29	98%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	1.04153e-29	98%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
37	75		25		0.996473
38			75	25	0.996473
39			25	75	0.996473
45		83	16		0.994512
57	12	87			0.992554
59			11	88	0.999952
230	95	0			1.0
287	71			28	1.0
314	86		0		1.0
370	31		67		1.0
645	97			0	0.963792
665		3	1	92	0.989772
669		4	1	93	0.99996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain