SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24869

Length: 1072 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24869

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caleosin n=1 Tax=Cycas revoluta RepID=B8XX15_CYCRE	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	rd20 protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	74%
Blast2go	alpha-Linolenic acid metabolism	00592	74%
Blast2go	Biosynthesis of plant hormones	01070	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	oxylipin metabolic process	GO:0031407	Biological Process	74%
Blast2go	response to fungus	GO:0009620	Biological Process	74%
Blast2go	response to salt stress	GO:0009651	Biological Process	74%
Blast2go	response to desiccation	GO:0009269	Biological Process	74%
Blast2go	response to cold	GO:0009409	Biological Process	74%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	74%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	74%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	74%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	74%
Blast2go	microsome	GO:0005792	Cellular Component	74%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Blast2go	Caleosin	IPR007736	-	74%
Blast2go	EF-hand-like domain	IPR011992	-	74%
Blast2go	EF-HAND 2	IPR018249	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P193

Fln msg:

Fln protein: MASPSEDSMQTVAGRAPITAQRRLNIHLQEQMPSPYLARALEAVDPEHKNGSTDHNNNDMSVLQQHVAFFDKDNDGIIYPTDFYKGLRAIGFSVLASLFIAVVTHLGFSYCTLPGWIPSLKFPIYIENIHRAKHGSDTESFDTEGRFDPARFDAIFSKYAIKHQDKLTFSEIQCMLKANRNLNDTFGWSAAQIEWVSLYVIAKNKDGLLERETIRRVYDGSLFEALAKQHSSRKRR*

Protein Length: 238

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTTTGTTCCATCGCACTTTTTAATTTGTTATTTTAAGGCAAGCTTGCTACTATTCTTAACATTGTCTTCTTTTGGATCTCACATAAAGCCCCTCAACGAACTGAAAG_-_ATGGCGAGCCCTTCAGAAGACTCCATGCAAACAGTTGCCGGACGGGCACCGATTACTGCACAGCGAAGATTGAACATCCACCTGCAAGAACAAATGCCAAGCCCATATTTAGCAAGAGCTTTGGAAGCAGTGGATCCAGAGCACAAAAATGGGTCCACGGATCATAATAACAACGACATGAGCGTTCTTCAACAACATGTGGCTTTTTTCGATAAAGATAACGATGGAATTATTTACCCAACTGATTTTTACAAAGGCCTTCGTGCCATAGGGTTTAGCGTCCTCGCTTCACTTTTCATAGCAGTGGTTACCCACTTAGGCTTCAGTTACTGCACTCTTCCGGGATGGATACCATCACTGAAATTTCCTATATACATTGAGAACATCCACAGAGCAAAGCATGGTAGCGACACGGAGAGCTTCGACACTGAGGGGAGGTTCGATCCTGCCAGGTTTGATGCCATCTTCAGCAAATACGCTATAAAACATCAAGACAAACTCACATTCTCGGAGATCCAGTGCATGCTGAAGGCCAATAGGAATTTAAATGACACTTTTGGATGGTCAGCAGCTCAGATCGAATGGGTTTCCTTGTACGTTATTGCAAAGAACAAGGATGGTCTTCTGGAGAGAGAAACCATACGAAGAGTGTATGATGGCAGCTTGTTTGAAGCACTGGCAAAGCAGCACTCATCTCGCAAAAGGCGCTAA___GCATTTACTATAAAGTAATATAACGCAGGGAGAAGAAAATAAACGCATGGATAGCACCTATTACTAAAATAAAACAAGTGCTATGACGCATGAGAGCACTTATTACTAAAATAAAAAGCAAGTTGCCATACAGTAACTTGTTATAGTGAAATTATGTGATTATTATTGAGCTGTTATTCATATGGCTATAGTGTATGGAGATATAAGTAATAAAAGAATAAGTTTTT

Fln Alignment:

sp_v1.1_unigene24869___MASPSEDSMQTVAGRAPITAQRRLNIHLQEQMPSPYLARALEAVDPEHKNGSTDHNNNDMSVLQQHVAFFDKDNDGIIYPTDFYKGLRAIGFSVLASLFIAVVTHLGFSYCTLPGWIPSLKFPIYIENIHRAKHGSDTESFDTEGRFDPARFDAIFSKYAIKHQDKLTFSEIQCMLKANRNLNDTFGWSAAQIEWVSLYVIAKNKDGLLERETIRRVYDGSLFEALAKQHSSRK
A9P193_______________MASPSEDSLQTVAARAPITAQRRLNIHLQEQMPKPYLARALEAVDPEHINGSTDYNNNDMSVLQQHVAFFDKDKDGIIYPCDTYKGFRAIGFNVLFSLFVAVIINVAFSYYTLPGWIPSLKFPVYVDNIHRAKHGSDTEVYDTEGRFDPDKFDAIFSKYAIKHKDKLTFWEIQCMLKGNRNSNDPLGWAAAELEWVALYLIAKNKNGLVEKETIRRMFDGSLFEALAKPQSSRK

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
68	73		26		1.0
87		82	17		1.0
93		82	17		1.0
97			60	39	1.0
116		82		17	1.0
121		82		17	1.0
134			30	69	1.0
154	82			17	1.0
248	84	15			1.0
263	78		21		1.0
266		15	84		1.0
273		15	84		1.0
276	15	84			1.0
280	78			21	1.0
291	78			21	1.0
292		78		21	1.0
311		64		35	1.0
353		25		75	1.0
356		75	25		1.0
376		83		16	0.999991
381	18			81	0.999994
382	18		9	72	0.999994
388	72	9	18		0.999994
398	20			80	0.999996
470		12		87	0.992554
471		83		16	0.994512
472		16		83	0.994512
473			16	83	0.994512
475	16	83			0.994512
477			83	16	0.994512
478		4	81		1.0
479	81		4		1.0
481		4	77	4	1.0
482		9	90		0.999842
484		13	4	81	1.0
485	90			9	0.999842
487	9	90			0.999842
521		88	3	7	0.999079
522		92	7		0.999664
523	88		3	7	0.999079
525	84			15	1.0
526		7	92		0.999664
528		7	88	3	0.999079
566	9		87		1.0
584		91		2	0.999994
599	4	95			0.995881
616	6			91	0.999996
669	92	7			0.999999
670	92		7		0.999999
672	92	7			0.999999
676	92	7			0.999999
677		7		92	0.999999
680	92		7		1.0
681	92		7		1.0
682	92	7			1.0
685	89			10	1.0
690		8		91	1.0
691	5			94	0.998397
697		7	90		0.999998
699		5		95	0.997749
704	92		2	5	0.990091
705	2	5	92		0.990091
709	92		2	5	0.990091
711	95	5			0.997749
714		2	92		0.991359
716	94	5			0.997984
727		3		96	0.988939
728	8		91		1.0
739	1	91		5	0.999912
745	94			1	0.941977
766	11		88		1.0
777	11	88			1.0
783			88	11	1.0
835	75	24			1.0
845	91		8		1.0
846	16		83		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain