SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24864

Length: 1119 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24864

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Water deficit inducible LP3-like protein (Fragment) n=7 Tax=Pseudotsuga menziesii var. menziesii RepID=Q5MDH5_PSEMZ	-	-	1.0e-36	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	water deficit inducible lp3-like protein	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABA/WDS induced protein	IPR003496	-	0.0	75%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
533	98		1		0.935086
596	5		94		0.90298
603	6		93		0.991528
642		87		12	0.993502
682	14		85		0.994477
698	85		14		0.994477
850	65	33		0	1.0
867	1	3	1	93	0.956609
880		2		97	0.977151
890	7		92		1.0
891	6	64	2	27	1.0
892	78	7	7	7	0.9897
898		12		87	0.999964
906	14			85	0.993533
907	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain