SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24830

Length: 1203 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene24830 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	94%
FL-Next	sp=Chalcone synthase; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	chalcone synthase	-	-	98%

Source	InterPros	Term	Type	Identity
Blast2go	Chalcone/stilbene synthase, N-terminal	IPR001099	-	98%
Blast2go	Chalcone/stilbene synthase, C-terminal	IPR012328	-	98%
Blast2go	Thiolase-like, subgroup	IPR016038	-	98%
Blast2go	Thiolase-like	IPR016039	-	98%
Blast2go	Chalcone/stilbene synthase, active site	IPR018088	-	98%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: P30079

Fln msg: your sequence is shorter than subject: 276 - 396

Fln protein: EWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIIGADPVPEVEKPCFELIWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ*

Protein Length: 277

Fln nts: AGGAGTGGGGACAGCCCAAGTCCAAGATCACCCATGTCGTTTTCTGCACTACCAGTGGCGTCGACATGCCCGGAGCCGACTATCAGTTGACAAAGCTTCTTGGCCTCCGCCCGAGCGTTAAGAGAGTCATGATGTACCAACAGGGCTGCTTTGCTGGAGGCACCGTCCTCCGCGTGGCTAAAGATCTGGCTGAGAACAATAGGGGAGCTCGGGTTCTGGTCGTCTGCAGTGAAATAACAGCCGTTACCTTCCGTGGCCCGTCCGACACTCACCTAGACAGTATGGTCGGCCAAGCTCTCTTTGGCGACGGTGCGGCCGCCCTCATCATCGGAGCCGATCCCGTCCCTGAGGTGGAGAAGCCGTGTTTCGAGCTGATATGGACTGCTCAGACAATTCTTCCTGACAGCGACGGAGCCATTGACGGGCACCTGAGAGAGGTAGGCCTTACCTTTCACCTTCTCAAAGACGTTCCCGGGCTCATCTCCAAGAACATCGAAAAGAGTCTGGTTGAGGCCTTCCAGCAGTTCGGAATCTCGGACTGGAACCAGTTATTCTGGATCGCACATCCCGGAGGTCCTGCCATTCTGGATCAGGTGGAGGCCAAGCTAAATTTGGATCCCAAGAAACTAAGTGCCACGAGGCAAGTACTGAGCGACTATGGAAACATGTCGAGCGCCTGCGTGCACTTTATCTTGGACGAGATGAGGAAGTCCTCTAAAGAGAAAGGATGTTCCACCACCGGAGAGGGACTGGATGTGGGAGTTCTGTTCGGATTCGGGCCGGGCCTCACCGTGGAAACCGTCGTCCTCAAGAGCGTTCCCCTGCAATAA___TTCAGAAACGGGCTCGATATTAGTTATGTGTGACTGGGAGGTTAGCGGGATTAAAATTGCGTAAATATTTTCTGTAATTCCTAAGTATTCAGGTTTCCTTAGGGTACGATGCAATGCTTTAGGGTTTGATATAATAGCGCTGTCTGATAACTTAAATTACTGGCCTATATTTACATAATGGGCCTTTTTCTTTGAGCCTTTTTCCAATTTCCCATGGTTTTGAGAGGAATATTGTTCTTCCTGTTTGTGGCTAACTAAGCCTTTCAATGAACCATTTTGTAAGTTGGTGATCATTCAGCTTTGAATACAGTAATATTTATTACTATTACAGATCCACGGCTCGAATCGAAAGAATAAAGGAATAATAAATTTT

Fln Alignment:

sp_v1.1_unigene24830___EWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQXXXXXXXXXXXXXXDPVPEVEKPCFELIWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPL
P30079_______________EWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
415		85	14		0.993533
577		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain