SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24794

Length: 1170 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24794

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=1 Tax=Coptis japonica RepID=B0I373_COPJA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	galactinol synthase 1	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQN6

Fln msg:

Fln protein: MGHYTSTLVFCKLVLLCNRLLNSSILNIDSPLLTMNPENSPIDQFFSAKAAAAKKKCRAYVTFLAGCGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEDHRLQLRRQGCIVRQIQPIHPPENQVQFSMPYYVLNYSKLRIWEFEEYSKMVYLDADIQVFDNIDHLFYAVMDCFCEKTWSHTPQYKIGYCQQCPEKVSWPVELGQRPSPYFNAGMFVFEPSQLTFDCLLETLMFAVTPFAEQDFLNMFFEKMYKPIPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRYSGEEENMEREDIKTLVQKWWDIYNDPSLDHSGSCDIIPDPISESDGKSNDLQRVAANSFFAAATPTNPNLMPAPPAA*

Protein Length: 374

Fln nts: _-_ATGGGACACTACACTTCTACACTCGTGTTCTGCAAATTGGTTCTTCTTTGCAACAGATTATTGAATTCCAGCATACTTAATATCGATTCTCCACTTCTCACCATGAATCCAGAAAATTCTCCTATAGATCAGTTCTTCAGTGCAAAGGCTGCGGCGGCCAAGAAGAAGTGCAGAGCGTACGTGACTTTCTTGGCTGGATGTGGCGACTATGTGAAAGGTGTGGTCGGTCTTGCAAAGGGTCTCCGCAAGGTGAAGAGCGCATATCCTCTCGTTGTTGCTGTGTTGCCCGATGTTCCAGAGGATCATCGACTGCAATTGCGAAGACAGGGTTGTATTGTTCGCCAGATTCAACCCATCCATCCCCCGGAGAATCAAGTGCAGTTTTCAATGCCTTACTATGTCCTTAACTACTCCAAACTCCGTATTTGGGAGTTTGAGGAGTACAGCAAGATGGTATATCTGGACGCAGACATCCAAGTCTTTGACAACATTGACCATCTCTTCTATGCTGTCATGGATTGCTTCTGCGAGAAGACATGGAGTCACACTCCGCAGTACAAGATCGGATACTGCCAGCAGTGTCCAGAGAAGGTGTCATGGCCCGTTGAATTAGGGCAACGGCCCTCTCCATACTTCAACGCTGGAATGTTTGTTTTTGAGCCGAGTCAGCTGACCTTCGACTGCCTTTTGGAAACTCTGATGTTTGCTGTCACTCCCTTCGCAGAACAGGATTTCTTGAACATGTTTTTTGAAAAGATGTACAAACCCATCCCTCTGGTGTACAATCTGGTTCTAGCCATGATGTGGCGGCATCCCCAGAACGTGGACTTGGACACTGTCAAAGTTGTTCACTACTGTGCCGCTGGATCGAAGCCGTGGAGGTACAGTGGGGAGGAGGAAAATATGGAGAGGGAAGATATAAAGACGCTGGTGCAGAAATGGTGGGACATATACAATGACCCCTCGTTGGATCACTCGGGATCATGCGACATAATTCCAGATCCAATTTCAGAGTCGGATGGAAAATCAAATGATCTGCAACGAGTGGCTGCTAATTCATTCTTTGCTGCTGCGACGCCAACAAATCCCAACTTAATGCCTGCACCGCCTGCAGCTTAA___GAGATTTCAAATTTGCAGAAGTCGCCTGTATATCATAAGTCGCCTGCAGCT

Fln Alignment:

sp_v1.1_unigene24794___MNPENSPIDQFFSXXXXXXXXXCRAYVTFLAGCGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEDHRLQLRRQGCIVRQIQPIHPPENQVQFSMPYYVLNYSKLRIWEFEEYSKMVYLDADIQVFDNIDHL-------FYAVMDCFCEKTWSHTPQYKIGYCQQCPEKVSWPVELGQRPSPYFNAGMFVFEPSQLTFDCLLETLMFAV-TPFAEQDFLNMFFEKMYKPIPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRYSGEEENMEREDIKTLVQKWWDIYNDPSLDHSGSCDIIPDPISESDGKSNDLQRVAANSF
A9NQN6_______________MNPEISPVDLLFGAKAAAAKKNCRAYVTFLAGCGDYVKGVVGLAKGLRNVKSAYPLVVAVLADVPEDHRLQLRRQGCIVRQIQPIDPPDNEVQFSMPYYVLNYSKLRIWEFEEYSKMVYLDADIQVFDNIDHLFDLRDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPEKVSWPIELGQRPSLYFNAGMFVFEPSQLTFDCLLETLMATVPTPFAEQDFLNMFFEKIYKPIPLAYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRFSGKEENMEREDIKTLVQKWWDIYNDPSLDHLGSGDTVPDPISEADGKSNDLQQVAANSF

SNPs (tot: 3)

Position	C %	G %	T %	Probability
878	60		40	1.0
1032	33		66	0.997452
1089		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain