SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24763

Length: 1533 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24763

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	polyubiquitin	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	89%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	89%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	89%
Blast2go	aging	GO:0007568	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	nucleolus	GO:0005730	Cellular Component	89%
Blast2go	vacuole	GO:0005773	Cellular Component	89%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	89%
Blast2go	Ubiquitin conserved site	IPR019954	-	89%
Blast2go	Ubiquitin supergroup	IPR019955	-	89%
Blast2go	Ubiquitin subgroup	IPR019956	-	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 57 aas, your sequence is shorter than subject: 307 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDxxIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDNVKAKIQDKEGIPPDQQRLIFAGKQADYNIQKESTLHLVLRLRGGMQIFVKNIFVKNLTGKTTTLEVESSDRIDNVKAKIQDKEGIPPDQQRLIFSGKQLEDGRTLADYYIKKESTLYLVDVVSYCNGLQCK*

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCATATTCTCGGGTGCGTTCTCATATCTTAGCGGCACGGTTTTAGAGCTCTTCGTTTACGGGTCTTCATTACCTTTATATCGTTTTCAAG_-_ATGCAGATCTTTGTTAAAACTCTCACTGGTAAGACGATCACCCTCGAGGTTGAAAGCTCTGACACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTGATCTTTGCAGGAAAGCAGCTAGAAGATGGCCGAACACTGGCCGACTACAATATTCAGAAGGAATCTACCCTGCACCTCGTGCTTCGTCTTAGAGGTGGCATGCAGATCTTTGTCAAAACCCTAACAGGCAAGACAATAACTTTGGAAGTTGAGAGCTCAGACACxxxAATTGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGTATTCCACCTGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGAACCCTTGCCGACTACAATATTCAGAAGGAATCCACCTTGCACCTTGTGCTCCGTCTGAGAGGCGGCATGCAAATATTTGTTAAAACCCTCACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCAGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCTCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTTCTTCGTCTGAGAGGTGGCATGCAAATTTTTGTGAAAAACATTTTTGTGAAAAACCTTACTGGGAAAACCACTACTTTGGAGGTGGAGAGCTCAGATAGGATTGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAACAAAGGTTGATATTTTCTGGTAAGCAGTTGGAAGATGGACGTACCCTGGCTGATTATTACATCAAGAAAGAGTCAACTCTGTACCTGGTTGACGTCGTTTCGTACTGCAATGGTTTACAATGCAAGTAGTTAATTCTTTTTGGATACAAAGAGACTATATCCGTTATATCATATGCATAAAATTTTCTTAAAAGATGAAGATTTCGAATGCATCTGTTATTTAAGTATCTCCATCAGTGAGAGAAGTTTCAAGTAGATTATTATTGTTTCTAACTTAAATGCATAACGTTATTTATTCCCAAGTTATTTTATGAAGATTCGGCTGTGGGATTCTGTTACTGGTCAATTTGAAAACCCATCTTTAGTAACTAAGTTCTGTCTGAAGACTTTGTTTCCATCCAACCATTTCCGAGACTTTATCTACTTTTTAATGGCATTTTTTTGGCAACGGAATGGACGATCTAACCATTTTTAAATGCGTTGTTTGCCAAACAATTGGACCATCTAGCTTCTTTTTACGTGCGTCGTTTGCCAACCAATTGGACAATCTTGTCACAGGTTCTTATCGGATCCGATAATATTATCGGATGGGATAATATAATGGGGGATATGCACTGATATTTTGTTA

Fln Alignment:

sp_v1.1_unigene24763___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGxIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS---DNVKAKIQDKEGIPPDQQRLIFAGKQ-------ADYNIQKESTLHLVLRLRGGMQIFVKNIFVKNLTGKTTTLEVESSDRIDNVKAKIQDKEGIPPDQQRLIFSGKQLEDGRTLADYYIKKESTLYLV
C0PSZ6_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGxIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ-----IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
24	11	66	22		0.999999
76	37	62			1.0
78			31	68	1.0
98		95	4		0.995881
257	90		10		0.90298
287		66		33	1.0
295	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain