SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24739

Length: 1525 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24739

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein / extensin family protein	-	-	68%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	27%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	78%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 781 aas, your sequence is shorter than subject: 419 - 1145

Fln protein: MWVNMRGRLKIKQFPAMQEAGLVVLLVLGFVLGLTAAQSDFNGKLSDEDVKYITHRQLLYHKDEFGDRGESVVVDPRFKFPNPKLRDAYIALQAWKEAIFSDPLNITGNWVGPNVCNYTGVFCSAPPYNKSILVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGIVPHSFKNMTLLYELDISNNRFAGPFPKVVIGLPSLKYLDIRFNEFEGKLPTKLFDKDLDAIFVNNNRFHLEIPSNLGNSPVSVVVFANNNLKGCVPPSLGKMAATLNEIIFLNNNLSACLPSEIGLLKNLTVFDVSFNKLVGPLPDSIGQMDSLEQLDVAHNMLTGKIPQSICALPNLDNFTYSYNFFTGEAPNCLALPSRGVTFDDKRNCIPSRPLQRTLQQCSAFLSRPGVDCSASSCNPRRIFT

Protein Length: 420

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTATTGGTATGAGCGCGTGAGCTTGGGTGTCACCACAGAAGTGAAGCTACATCTACTTAATGGTGGAGATGGAATAGCATTCGATTAGCGTTGCTATTTACCGATATCAAGGCGAACAACTGGCCCCTGGGAACTCCCCAGCCAATAAATTTCCAGTGGGTCTGCCTGAGTAGCCTAGATTAGCTCTTTAAAGGGAGCGGTCCGAGCCTCCTGAATTGATAATCCTGCAACCCAAATGAGAGA_-_ATGTGGGTTAACATGAGAGGAAGACTCAAAATCAAGCAATTTCCTGCAATGCAGGAAGCGGGTCTTGTTGTTTTGCTTGTTTTGGGCTTCGTTCTTGGGCTTACAGCAGCTCAGTCAGATTTTAATGGCAAGCTGTCCGATGAAGATGTCAAGTACATTACCCACAGGCAGCTGCTGTATCACAAGGATGAGTTTGGGGACAGAGGAGAAAGTGTAGTGGTCGATCCAAGGTTCAAGTTCCCTAATCCGAAGCTTAGAGATGCCTACATTGCTCTCCAGGCTTGGAAAGAAGCTATATTCTCAGACCCATTGAACATAACTGGGAACTGGGTCGGCCCTAATGTCTGTAACTACACTGGTGTCTTTTGTTCTGCTCCACCGTACAACAAATCCATTTTGGTTGTAGCGGGCATTGATCTGAACCATGCAGACATTGCAGGGTATCTGCCTACGGAGCTCGGCCTTCTCACAGATCTGGCATTGTTCCATATCAATACTAACAGGTTCTGTGGGATTGTGCCTCATAGTTTCAAGAATATGACCCTGCTGTATGAGCTTGATATCAGTAATAACAGGTTTGCTGGGCCATTCCCAAAGGTAGTTATCGGTCTACCTTCACTGAAGTACTTGGACATTCGGTTCAATGAGTTCGAGGGAAAGCTGCCCACGAAGCTGTTTGACAAAGATCTTGATGCCATCTTCGTCAACAATAACAGGTTTCATCTTGAAATCCCTTCTAATCTTGGAAATTCTCCTGTTTCTGTTGTTGTTTTCGCCAACAATAATCTCAAAGGATGCGTTCCTCCCAGTCTGGGAAAAATGGCTGCCACTCTTAATGAGATCATATTCTTGAATAATAATCTGTCAGCCTGCCTGCCATCTGAGATTGGCTTGCTGAAAAACCTGACTGTCTTTGATGTGAGTTTCAATAAGCTAGTTGGGCCTCTGCCAGACAGCATTGGGCAGATGGACAGCTTGGAACAATTGGATGTTGCCCACAATATGTTAACTGGAAAGATCCCCCAGAGCATCTGTGCATTGCCCAATTTGGATAATTTTACTTACTCCTACAACTTCTTTACTGGGGAGGCACCCAATTGCCTGGCCCTTCCTAGCAGAGGCGTTACCTTTGATGACAAGAGAAATTGTATCCCCAGCAGGCCTCTTCAGAGAACACTCCAACAATGTTCCGCGTTCCTGTCTCGGCCTGGCGTAGATTGCTCTGCATCCTCCTGTAATCCTCGGAGGATTTTCACC

Fln Alignment:

sp_v1.1_unigene24739___NVCNYTGVFCSAPPYNKSILVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGIVPHSFKNMTLLYELDISNNRFAGPFPKVVIGLPSLKYLDIRFNEFEGKLPTKLFD-KDLDAIFVNNNRFHLEIPSNLGN--SPVSVVVFANNNLKGCVPPSLGKMAATLNEIIFL---NNNLSACLPSEIGLLKNLTVFDVSFNKLVGPLPDSIGQMDSLEQLDVAHNMLTGKIPQSICALPNLDNFTYSYNFFTGEAP
Q9FEU2_______________NPCKWTGVICSLDHEN----LVTEINIQSVQIAGNVPSQFAVLGSLR------------------------SLVISAANLTGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCHNLVDLVVF-DNQLSGKIPAELGRLA---NLEVFRAGGNENIEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIP

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
39	50	50			1.0
43	50		50		1.0
47		50	50		1.0
49	50			50	1.0
50		50		50	1.0
52	50		50		1.0
53		50	50		1.0
54	50			50	1.0
55	50		50		1.0
56		50		50	1.0
227		33	66		0.997452
231		66		33	0.997452
234		33	66		0.997452
236		66		33	0.997452
238		66	33		0.997452
242	66	33			0.997452
244		33		66	0.997452
246		33	66		0.997452
439			90	10	0.90298
440		90		10	0.90298
441	90	10			0.90298
444	10			90	0.90298
449	10			90	0.90298
450	90		10		0.90298
452		90	10		0.90298
458	20		80		0.999996
459	90	10			0.90298
460		10		90	0.90298
499	90		10		0.90298
500	90			10	0.90298
501		10	90		0.90298
505		90	10		0.90298
507	87	12			0.992554
508		12	87		0.992554
511		87	12		0.992554
512		87	12		0.992554
516	87		12		0.992554
520			87	12	0.992554
521	87	12			0.992554
668			10	90	0.90298
730		83		16	0.994512
736			16	83	0.994512
784			83	16	0.994512
788			83	16	0.994512
795	85		14		0.993533
796		14		85	0.993533
797	85	14			0.993533
800			14	85	0.993533
801	14			85	0.993533
804	85	14			0.993533
805			85	14	0.993533
806	85			14	0.993533
807	85		14		0.993533
808			14	85	0.993533
809	85	14			0.993533
812	85			14	0.993533
814	14	85			0.993533
816	14			85	0.993533
817		14	85		0.993533
818	14	85			0.993533
859	83			16	0.994512
873		16		83	0.994512
875	83	16			0.994512
878		16	83		0.994512
879	16		83		0.994512
883	83		16		0.994512
899		20		80	0.995493
907		20		80	0.995493
908	20	80			0.995493
973		85		14	0.993533
1006			14	85	0.993533
1010	85		14		0.993533
1012		14		85	0.993533
1018	85	14			0.993533
1019	85			14	0.993533
1020	85		14		0.993533
1022	14			85	0.993533
1026	14	85			0.993533
1173	93	0		0	1.0
1506	20		80		0.995493
1522	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain