SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24737

Length: 1486 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24737

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	quinone reductase family protein [Arabidopsis thaliana] gb\|AAQ65137.1\| At4g27270 [Arabidopsis thaliana] dbj\|BAD95300.1\| putative protein [Arabidopsis thaliana]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	quinone reductase family protein	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	NADPH-dependent FMN reductase	IPR005025	-	92%
Blast2go	Flavodoxin/nitric oxide synthase	IPR008254	-	92%
Blast2go	Flavoprotein WrbA	IPR010089	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRI9

Fln msg:

Fln protein: MAVKIYIVFYSMYGHVEKLAEEIKKGAASVEGVEVTLWQVPEILPEGVLIKMHAPPKSEVPIIEPQQLADADGLLFGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQNGGQETTALTAVTQLVHHGMLYVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRQPSKLELEQAFHQGKYLAGIAKKLKGEA*

Protein Length: 205

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTACTCCTCAAATTCCATCCCCGGTGAAGAAGGTCCAAAAAAAACCAACATGGGGTATCTTGTAAATCACCCAAAGTTTAACCCAAAACAAGGGAAAATGATGCCATGCCATGCCACGCCATGATCTCCTCACGAGATAGAGGACTCGGAGAGTCGTGTCTATGATGAGGCAGCACCCTCGAAGGTCTAACTACCACAACACTCATGACCCCGTTAAACGTCACGCTCTCTTCACCTTTGGACCGAAGCTAAGCCCTCGGCATTGGCTTTTTCTATAAAAGGCCACTCATACCTGCCTATTACACAGCGAATCATCGTTCTCTCATTGAGAAATAGTGAAAAGCATTGTTCGTTGATTCAACTAATTCAGCAGATTCAAA_-_ATGGCTGTCAAGATTTACATTGTGTTCTATTCGATGTATGGACATGTAGAGAAACTTGCCGAGGAGATTAAAAAAGGCGCTGCCTCTGTGGAAGGAGTAGAAGTCACATTGTGGCAGGTTCCTGAAATACTCCCAGAGGGAGTGCTCATAAAAATGCATGCACCACCCAAGTCTGAAGTGCCAATTATTGAGCCCCAGCAACTGGCCGATGCAGATGGCCTTTTATTTGGCTTTCCCACGAGATATGGAATGATGGCAGCTCAGTTTAAAGCTTTCTTGGATGCAACAGGTGGGCTATGGCGAACTCAACAATTAGCAGGGAAGCCAGCTGGTCTTTTCTATAGCACAGGATCACAGAATGGTGGACAGGAGACTACCGCATTGACGGCTGTAACACAGCTGGTTCACCATGGCATGCTCTATGTACCAGTAGGATACACCTTTGGAGCTGGAATGTTTGAGATGGAACAAGTGAAAGGGGGCAGTCCATATGGTTCTGGAACTTTTGCTGGTGATGGTTCACGCCAGCCAAGCAAGCTAGAATTGGAGCAAGCTTTTCATCAAGGAAAATATCTTGCCGGCATTGCTAAGAAACTCAAGGGAGAAGCCTGA___TGCACACAGCACAATTGTGCATTAGACCTTGCTTCAATAGCTATTTTCTAATTCGGTGCCAATTTAGCTTGATTCACATTGCCATTATTCAGTTCATAGTACAAGAGTTCATATAACATTGTTTGTGATATGGTACTTATCTCATTATTTGGGTGCATTCTATATTGTTTTTAGTTTCTTAGTTGCCTGGCATTGCTATTGTAATGATGATGCACTGAACAACTTTAAAAACTTTGAAATATATGCTATTAATTTCATCCTAGCGTAACCCAGTTATTTGGGTGCATGTTCTCTAGCGATAAAGTGTGCACTTGAAAAACATGGATTGCATGTATGTGCAGGTAGCTTTTAAATTTGCTTTTGTAAAGAATTACAAAGGTTCCAGGTGCTACATATAATATACTCATCACTTAAATGGAATGATATTTACATGCAGTGATGATTTTAATTCAGTAACAGCTTTTTTC

Fln Alignment:

sp_v1.1_unigene24737___MAVKIYIVFYSMYGHVEKLAEEIKKGAASVEGVEVTLWQVPEILPEGVLIKMHAPPKSEVPIIEPQQLADADGLLFGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQNGGQETTALTAVTQLVHHGMLYVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRQPSKLELEQAFHQGKYLAGIAKKLKGEA
B8LRI9_______________MAVKIYIVYYSMYGHVEKLAEEIKKGAASVEGVEATLWQVPETLPEEVLIKMNAPPKTKVPTIEPQQLADADGLLFGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMLFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRQPSKLELEQAFHQGKYLAGIAKKLKGEA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
317	75		25		0.996473
326		75	25		0.996473
329	75		25		0.996473
331		25		75	0.996473
334	75			25	0.996473
463	25		75		0.996473
590	10		90		0.992513
1307	11	88			0.923564
1309	11			88	0.923564
1310		11	88		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
128	143	ATGCC ATGCC ATGCC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain