SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24721

Length: 2268 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24721
CGTCGTGACCTTGGCTGTCACTCAATTTGTATTTGTATACGTTGGCCCCCAAGATTGAAATTAGAAATCGTTCTATCTTGAGTCTTCCTTGTTTAGCCAAGGTTGAAACGGATATTGCCCTGTTTCCACCCAGATCATTTGTTATAAAGAGATCTGCTCTTCTTCTTTCTGTGGTATAGGTTGTTGAGAGGGTAAGAGTTGCAATATTTTGACATTGAAGAAAATTTTCAGTATTTTAAGTTAAGAGTTTAGTGCAGAAACCATGCCTGCCGCGGGATTTGCCGCTCCAGTAGCGCCTGGGGCTGTAGAGTTCGAGGCGCGCATAACGCCGTATGTGATCATTACTTGTATCATGGCTGCGAGCGGCGGGTTGATGTTTGGCTACGATGTCGGAATCTCTGGTGGAGTGACTTCCATGGATGATTTTCTGGAGAAATTTTTCCACAAAGTCTATATCAACAAGCAAAAGGCGAAAGAAAATGCATACTGCAAGTACGACAATCAGGGATTACAGCTGTTTACTTCCTCTCTGTATCTAGCCGGTCTCATAGCGACCTTTTTTGCATCATATACTACCAGAAGATTTGGCCGGAGACCAACCATGCTTATTGCCGGTATATTCTTTCTCGTGGGAGTCACCTTCAATGCGGCAGCGCAAGATCTTGCTATGCTCATCGTCGGAAGATTATTACTGGGATGTGGAGTCGGATTTGCTAATCAGGCGGTTCCTCTATTCCTGTCAGAGATAGCACCGACTAGAATTCGAGGGGGTCTAAACATCCTCTTCCAGCTCAACATTACGATAGGCATTCTGTTTGCGAATTTGGTGAACTACGGAACAAGTAAGATCACGCCATGGGGATGGAGGCTTTCGTTGGGCTGGCTAGGGATCCCTGCAGTTCTGCTCACTGTTGGCTCTATATTTTTAGTGGAGACACCCAACAGTCTGATTGAAAGAGGATACCTGGAAGACGGCAAGCATGTATTGAAAAAAATCAGAGGCACCAATAATGTGGATGCAGAGTTCAATGAACTAGTCGAGGCTAGTAGAATAGCGGCGACAGTGAAGCATCCATTCCGAAACCTTTTGAAGCGCAGGAATAGGCCTCAGCTTGTCATTACCTTTTTTCTGCAGCTCTTCCAGCAGTGTACCGGTATCAATGCCATTATGTTTTATGCTCCTGTGCTCTTCCAGACCTTGGGATTCAAGAACGATGCTTCACTTTACTCTGCCGTTATTACTGGAGCCGTCAATGTATTATCAACTGTTATATCTATCTATGCGGTCGATAAAGTCGGTAGAAGAGCGCTTCTTCTCGAAGCAGGAGTACAGATGTTCGTCTCACAGGTCATTATTGCAATCCTTCTGGCAACAGGTATGAAGGACGAGTCAAAACTTCCTCACGGCACGGCCATTGTAATAGTGTTGCTGATTTGCGTTTTCGTATCATCCTTTGCCTGGTCATGGGGACCACTGGGATGGCTGATTCCCAGCGAAACCTTTCCCCTGGAAACAAGGTCTGCTGGACAGAGTGTGACCGTCTGCGTGAATCTCCTGTTCACTTTTGTGATTGCACAGGCCTTCTTGTCAATGCTTTGCCATTTCAAATACGGGATCTTTTTGTTCTTTGCCAGCTGGGTGTTGGTTATGTCCGTATTTGTGTTGTTTCTCCTTCCAGAGACGAAGAATATCCCAATTGAAGAGATGACAGACAGAGTCTGGAAGAAACATTGGCTGTGGAAGAGATTTGTCACAGATGCCGACCTCATTGACGACGATGACGAAGATGTTTATTCCAAGAAAGAAAATGGTAAAGGCGATGCCAAAGCCTATAATAATTCCCAGTTGTGATCTTTCTCCATCCCATTTCATCAGTTATGATCTTTGTCCATCCCATTTCATCACAGCGAGAATCACAGATCCATCCACCCCACCACACAGTTAACCGTCAGGTCACCTCTGGCGCAGCATCATAGGCGCGTAACAAAATTTTAACTACCGCTTATTACTCGCAAGATTAATGTAAAGCAAGTATTTACAGTCTCACACTCCACGTATCACATGTATTGTATCTTTTCGATGATTTCATCTGTCATCCTCTTTAAATTTTTCTTGAAATGTTAGGCCGAATCGGCACTTAAAGAGCAGTCGATACTTAGACTACTCCTGGACTTAAATTCCTACCAGTGAAGTTATAAAATCTGGACATAGTTTTTTTCTCTTTCCTGTTCCAATGGAAACTGTATGAAATGTTTTCTCTATTTGGT

Ace file of the UniGene sp_v1.1_unigene24721

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HT5; hexose transporter	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	hexose transporter	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg:

Fln protein: MPAAGFAAPVAPGAVEFEARITPYVIITCIMAASGGLMFGYDVGISGGVTSMDDFLEKFFHKVYINKQKAKENAYCKYDNQGLQLFTSSLYLAGLIATFFASYTTRRFGRRPTMLIAGIFFLVGVTFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTSKITPWGWRLSLGWLGIPAVLLTVGSIFLVETPNSLIERGYLEDGKHVLKKIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQLVITFFLQLFQQCTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIYAVDKVGRRALLLEAGVQMFVSQVIIAILLATGMKDESKLPHGTAIVIVLLICVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMTDRVWKKHWLWKRFVTDADLIDDDDEDVYSKKENGKGDAKAYNNSQL*

Protein Length: 531

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTATTTGTATACGTTGGCCCCCAAGATTGAAATTAGAAATCGTTCTATCTTGAGTCTTCCTTGTTTAGCCAAGGTTGAAACGGATATTGCCCTGTTTCCACCCAGATCATTTGTTATAAAGAGATCTGCTCTTCTTCTTTCTGTGGTATAGGTTGTTGAGAGGGTAAGAGTTGCAATATTTTGACATTGAAGAAAATTTTCAGTATTTTAAGTTAAGAGTTTAGTGCAGAAACC_-_ATGCCTGCCGCGGGATTTGCCGCTCCAGTAGCGCCTGGGGCTGTAGAGTTCGAGGCGCGCATAACGCCGTATGTGATCATTACTTGTATCATGGCTGCGAGCGGCGGGTTGATGTTTGGCTACGATGTCGGAATCTCTGGTGGAGTGACTTCCATGGATGATTTTCTGGAGAAATTTTTCCACAAAGTCTATATCAACAAGCAAAAGGCGAAAGAAAATGCATACTGCAAGTACGACAATCAGGGATTACAGCTGTTTACTTCCTCTCTGTATCTAGCCGGTCTCATAGCGACCTTTTTTGCATCATATACTACCAGAAGATTTGGCCGGAGACCAACCATGCTTATTGCCGGTATATTCTTTCTCGTGGGAGTCACCTTCAATGCGGCAGCGCAAGATCTTGCTATGCTCATCGTCGGAAGATTATTACTGGGATGTGGAGTCGGATTTGCTAATCAGGCGGTTCCTCTATTCCTGTCAGAGATAGCACCGACTAGAATTCGAGGGGGTCTAAACATCCTCTTCCAGCTCAACATTACGATAGGCATTCTGTTTGCGAATTTGGTGAACTACGGAACAAGTAAGATCACGCCATGGGGATGGAGGCTTTCGTTGGGCTGGCTAGGGATCCCTGCAGTTCTGCTCACTGTTGGCTCTATATTTTTAGTGGAGACACCCAACAGTCTGATTGAAAGAGGATACCTGGAAGACGGCAAGCATGTATTGAAAAAAATCAGAGGCACCAATAATGTGGATGCAGAGTTCAATGAACTAGTCGAGGCTAGTAGAATAGCGGCGACAGTGAAGCATCCATTCCGAAACCTTTTGAAGCGCAGGAATAGGCCTCAGCTTGTCATTACCTTTTTTCTGCAGCTCTTCCAGCAGTGTACCGGTATCAATGCCATTATGTTTTATGCTCCTGTGCTCTTCCAGACCTTGGGATTCAAGAACGATGCTTCACTTTACTCTGCCGTTATTACTGGAGCCGTCAATGTATTATCAACTGTTATATCTATCTATGCGGTCGATAAAGTCGGTAGAAGAGCGCTTCTTCTCGAAGCAGGAGTACAGATGTTCGTCTCACAGGTCATTATTGCAATCCTTCTGGCAACAGGTATGAAGGACGAGTCAAAACTTCCTCACGGCACGGCCATTGTAATAGTGTTGCTGATTTGCGTTTTCGTATCATCCTTTGCCTGGTCATGGGGACCACTGGGATGGCTGATTCCCAGCGAAACCTTTCCCCTGGAAACAAGGTCTGCTGGACAGAGTGTGACCGTCTGCGTGAATCTCCTGTTCACTTTTGTGATTGCACAGGCCTTCTTGTCAATGCTTTGCCATTTCAAATACGGGATCTTTTTGTTCTTTGCCAGCTGGGTGTTGGTTATGTCCGTATTTGTGTTGTTTCTCCTTCCAGAGACGAAGAATATCCCAATTGAAGAGATGACAGACAGAGTCTGGAAGAAACATTGGCTGTGGAAGAGATTTGTCACAGATGCCGACCTCATTGACGACGATGACGAAGATGTTTATTCCAAGAAAGAAAATGGTAAAGGCGATGCCAAAGCCTATAATAATTCCCAGTTGTGA___TCTTTCTCCATCCCATTTCATCAGTTATGATCTTTGTCCATCCCATTTCATCACAGCGAGAATCACAGATCCATCCACCCCACCACACAGTTAACCGTCAGGTCACCTCTGGCGCAGCATCATAGGCGCGTAACAAAATTTTAACTACCGCTTATTACTCGCAAGATTAATGTAAAGCAAGTATTTACAGTCTCACACTCCACGTATCACATGTATTGTATCTTTTCGATGATTTCATCTGTCATCCTCTTTAAATTTTTCTTGAAATGTTAGGCCGAATCGGCACTTAAAGAGCAGTCGATACTTAGACTACTCCTGGACTTAAATTCCTACCAGTGAAGTTATAAAATCTGGACATAGTTTTTTTCTCTTTCCTGTTCCAATGGAAACTGTATGAAATGTTTTCTCTATTTGGT

Fln Alignment:

sp_v1.1_unigene24721___RITPYVIITCIMAASGGLMFGYDVGISGGVTSMDDFLEKFFHKVYINKQKAKENAYCKYDNQGLQLFTSSLYLAGLIATFFASYTTRRFGRRPTMLIAGIFFLVGVTFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTSKITPWGWRLSLGWLGIPAVLLTVGSIFLVETPNSLIERGYLEDGKHVLKKIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQLVITFFLQLFQQCTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIYAVDKVGRRALLLEAGVQMFVSQVIIAILLATGMKDESKLPHGTAIVIVLLICVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKYGIFLFFASWXXXXXXXXXXXXPETKNIPIEEMTDRVWKKHWLWKRFVTXXXXXXXXXXXVYSKKENGKGDAKAYNNSQL
B8LLP1_______________RITPYVIMTCIIAASGGLMFGYDVGISGGVTSMDDFLEKFFPAVYRKKKLVKENAYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRRYGRRPTMLIAGLFFLVGVIFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTNKITPWGWRLSLGLAGIPAILLTVGSIFLVETPNSLIERGHLENGKHVLKKIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQIVITICLQIFQQFTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIFAVDKVGRRALLLEAGVQMFISQVIIAILLATGLKDGEDLPHATAIIIVLLVCVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFAIAQAFLSMLCHLKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMMERVWRKHWLWKRFVTDADLMDDDDEDVYSKQENGKGNGKTYDNSQL

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
10	40	60			1.0
13			40	60	1.0
17	40			60	1.0
19	40			60	1.0
20		60	40		1.0
100	85		14		0.993533
101	85			14	0.993533
102		14	85		0.993533
108	85	14			0.993533
109	85			14	0.993533
110		85		14	0.993533
113	85	14			0.993533
115	85		14		0.993533
117		14		85	0.993533
118	14		85		0.993533
120		85		14	0.993533
122	14			85	0.993533
152		11	88		0.923564
153	88		11		0.923564
158	11	88			0.923564
159		11		88	0.923564
164			11	88	0.923564
165			11	88	0.923564
168			11	88	0.923564
171	11			88	0.923564
172		11	88		0.923564
175		11	88		0.923564
176	11			88	0.923564
239	90		10		0.90298
330		88		11	0.923564
462	66		33		0.997452
463	66			33	0.997452
1314			10	90	0.90298
1318			10	90	0.90298
1319	10	90			0.90298
1320		10		90	0.90298
1322			90	10	0.90298
1323	90			10	0.90298
1324	90		10		0.90298
1327	90			10	0.90298
1329		10	90		0.90298
1330	91	8			0.999766
1334		91	8		0.999766
1335	91			8	0.999766
1338		8		91	0.999766
1339		8	91		0.999766
1344			8	91	0.999766
1347		91	8		0.999766
1348	91			8	0.999766
1352		8	91		0.999766
1555		8		92	0.999718
1558		92	8		0.999718
1563	8			92	0.999718
1565	92			8	0.999718
1661	8			91	1.0
1663			8	91	1.0
1665			8	91	1.0
1713		97		2	0.969538
1944	85	14			1.0
2220	12			75	0.975346
2221			12	87	0.992554
2223			14	85	0.993533
2224	14			85	0.993533
2225			16	83	0.994512
2227		83	16		0.994512
2228	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain