SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24712

Length: 1495 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene24712 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EXL2; EXL2 (EXORDIUM LIKE 2)	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	phi-1-like protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphate-induced protein 1	IPR006766	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUB5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: ACSVSWFRLTAILHMATLFAFLASCSWLSLKLAALVADPAVVLTYHDGPLLSTSGVITVHLIFYGQFTPVQRSIVADFLQSLGEKALEGKANQPSASTWWKTTEKYEGAAKNKAAPSSVIMLGKQKMDSDYSLGKSLKRTDIAALVEAAVKSGALPLPLPESNDGSANAVYLVLTSEDVTVEGFCMSSCGFHASLNLLSDQKLTRSRIMGNEEKHQQLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPNGDVGIDGMIINIATVVAGATTNPFDTGYFQGDAAAPLEAVSACAGIYGKGSYPGFPGELQVDKTTGASYNANGVNGREFLLPAMWDPATQSCKTLI*

Protein Length: 353

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCAATCGCTTTCACCATTTCATAACAGTGTCTTCACTTTGCCCTATTTATATATCGCTCCTCCTCATCTTCTCAGTACACAGCCTTTTGCAGTTTCCAATTTCTTCGTTCATTGTTTTTCTTGCCTCCTAGAGTGGTGTAACGAATTCTGACGCTGTTGCATTGTTTGTTTTTTCGCGATTGCCAAGAAAGTTTAGTCATTTGTCTGGCTGTCTGATAGATAGGGAGTGTCGCAAGGTATTTCATTAACTTGCCTTAAAATAGGCTTGTTCTGTTTCATGGTTTCGACTTACCGCCATTCTGCATATGGCGACGTTATTTGCGTTTCTTGCTTCTTGTTCTTGGCTGTCGCTGAAACTTGCTGCTTTGGTGGCAGACCCTGCTGTTGTTTTGACTTACCATGATGGTCCTCTGCTCTCTACCAGTGGGGTGATCACTGTCCATTTGATCTTCTATGGGCAATTCACCCCTGTTCAACGCTCCATTGTGGCAGATTTCCTGCAGTCTCTTGGGGAAAAGGCGTTAGAGGGGAAAGCAAATCAGCCCTCCGCGTCCACCTGGTGGAAGACCACCGAGAAGTATGAGGGCGCAGCCAAAAACAAGGCGGCTCCCTCCAGTGTTATAATGCTTGGAAAGCAGAAGATGGATTCAGATTATTCCCTTGGCAAGTCACTCAAGAGGACTGACATTGCTGCTCTGGTTGAAGCGGCCGTCAAGTCGGGAGCTTTGCCTCTGCCTCTGCCGGAAAGTAATGATGGAAGTGCCAATGCTGTGTATTTGGTGCTTACATCTGAGGATGTTACAGTGGAAGGGTTCTGCATGAGTTCCTGTGGATTCCATGCCAGTCTCAATTTATTATCGGACCAGAAATTAACTAGAAGCCGAATAATGGGGAATGAGGAGAAGCATCAACAGCTTCTTCCATACGCATGGGTGGGGAATTCTGCGAGTCAGTGCCCTGGACAGTGCGCGTGGCCCTTCCATCAGCCCATGTACGGACCCCAGACTCCTCCCTTGGTGGCACCAAACGGAGACGTGGGCATCGATGGCATGATCATCAACATTGCCACTGTTGTGGCAGGAGCAACCACTAATCCATTCGACACAGGCTACTTCCAAGGGGATGCTGCCGCACCTTTAGAGGCCGTGTCTGCTTGCGCGGGAATTTACGGAAAGGGGTCATATCCGGGGTTCCCAGGGGAGCTTCAGGTAGATAAAACGACAGGGGCAAGCTACAATGCCAATGGAGTTAATGGGAGGGAGTTTCTGCTCCCAGCTATGTGGGATCCGGCTACCCAATCATGCAAGACGTTGATATAA___TCATTTTTTGTAATTGTCGCAGTCCTAAACCTGCCTAAAGAAGGCAGGGAGCAGGTAGATTTAGGCGCAGAAGAAGTGGCATCTATTATGCCGCATTTCAACAGATATTCTTTATTCTTTATAGAGATTAATACACATTCTTTTGTCTGAC

Fln Alignment:

sp_v1.1_unigene24712___ACSVSWFRLTAILHMAT----LFAFLASCSWLSXXXXXXXXXXXXXLTYHDGPLLSTSGVITVHLIFYGQFTPVQRSIVADFLQSLGEKALEGKANQPSASTWWKTTEKYEGAAKNKAAPSSVIMLGKQKMDSDYSLGKSLKRTDIAALVEAAVKSGALPLPLPESNDGSANAVYLVLTSEDVTVEGFCMSSCGFHASLNLLSDQKLTRSRIMGNEEKHQQLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPNGDVGIDGMIINIATVVAGATTNPFDTGYFQGDAAAPLEAVSACAGIYGKGSYPGFPGELQVDKTTGASYNANGVNGREFLLPAMWDPATQSCKTLI
A9NUB5_______________SCSVSWLRFLARLQMAVCMAMLFASSASSAGQSRKLAALVEDPSVVLTYHDGPLLSTSGIIPVHLIWYGQFTPVQRSIVGDFLQSLGAKKLEGKTMESSTSTWWKTIEKYEGVGKNNAAPSSVIMLGKQKVDQDYSLGKSLKRTDIAALVQAAVKSGVLPSPLPEINAENANAVYLVLTSEDVTVEGFCMNSCGFHASLNLLSNHKSTGSRMMGKEEKHQQLLPYAWVGNSASQCPGQCAWPFHQPIYGPQTPPLVAPNGDVGIDGMIINIATVLAGAATNPFNTGYFQGDAAAPLEAVSACPGIYGKGSYPGFPGELQVDKTTGASYNAHGVNGREFLLPAMWDPATRSCKTLI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1043	75			25	0.996473
1093	33	33		33	0.997753
1106	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain