SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24710

Length: 1384 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24710

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S4B8_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	lob domain-containing	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lateral organ boundaries, LOB	IPR004883	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2E3

Fln msg:

Fln protein: MSRERENFESFSRRASFKQLADADRMGRRQILGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQAQSLQSELNSVRAEIMRYKFRSEAAVMHHQPPGQSSHQASMMPSSSAVYSQGSASTDYTAMNDHSNYYG*

Protein Length: 199

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGCTGGCGGAGGAGAAGCAAGAAAGGAAGTTCGAGATTATAGCTTGCTTTAAGGATTGAAAGAAGTGGCAGGGAAGTCTAGTCTATTCTTTCTGCGCCTGCAACAAACACTCATTACTTGAATGTCAAGCCAAGTACAGAAAAGTGGGGGACCCTCGACAACCCATTCTCTCAGAGCACCACAGATCGTATGAATGAATTCCTAGGGTTTCACCTGCTGTTTAATTTTTCCCATGGACAAATAGAATGTTCAACGACTGTTACTGTAGCGGATCTATGTATTAATGAAGAGAAACAGTTGATAAGACGTTATCACTTTATTGGATTGATCAGAGCTCCAGAACCCAAGGGGTTGGCCCTGATTTATTGCTGGGTTGGTCCTGATTTCTATAAGGATTTGCAGTCCATGAACGTCTATTGCGCCATAGTGGCAGGAGACCTGATCCAGCCTATAAATCAAGCGTGAGCATGTTTGA_-_ATGTCCAGAGAAAGGGAAAACTTTGAGAGCTTTTCCAGGAGAGCGAGTTTTAAGCAATTAGCAGATGCAGATCGCATGGGGCGCAGGCAAATCCTTGGGCCCCCGGGGACTTTAAACACCATCACTCCATGCGCGGCCTGCAAGCTCCTGAGGAGGCGCTGTGCTCAGGAGTGCCCGTTTTCGCCATATTTTTCACCTCACGAGCCTCAAAAATTTGCTTCTGTTCACAAGGTTTTCGGTGCAAGCAACGTGTCCAAGATGCTCCTGGAAGTCCCGGAGAGCCAGCGAGCAGATGCAGCGAACAGCCTGGTTTATGAAGCCAACGTTCGCCTGAGAGATCCAGTGTATGGATGTATGGGAGCCATATCCTCATTGCAACAGCAAGCACAGTCCCTACAGTCAGAGCTCAATTCAGTGAGAGCAGAGATCATGAGATACAAATTTCGCTCAGAGGCAGCAGTCATGCACCACCAGCCACCTGGCCAATCCTCTCATCAAGCTTCAATGATGCCATCTTCGTCTGCTGTTTATTCCCAAGGCAGTGCATCTACCGACTACACTGCCATGAACGACCATTCCAATTACTATGGCTGA___CACCACGACTATTAATAATCAATAGCATGGTCCCTAGTCATCATTCTGAGAAAGCCATCTCTAACAATTGGATGAGAATTCTTTATTTCGATATATGCAGGCATGCAGGTTATCGCCATTATCATATCGCCAGCGTTTTAATATTTGTGAAGAGTGATTGAAAACTCTCACAATATTCATTCATATTGGATAATAAAATCTCCTTTAGAGGACTGTAAACCTGAATTGCATTTCTATGTAAAAAGGTATGGAGAGCCCTTGCAATCTAGCAAAAGCCAATATTGTTCTTT

Fln Alignment:

sp_v1.1_unigene24710___ILGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAIXXXXXXXXXXXXXXXXVRAEIMRYK
A9P2E3_______________MVGGQKPLNTSTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVPESQRSDTANSLVYEANARLRDPVYGSMGVISTLQHQIQSLQSELNVVRAELVRYR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
77	77	18		4	1.0
79		4	77	18	1.0
80	77	22			1.0
81			18	81	1.0
85	77	22			1.0
86	77	18		4	1.0
87			81	18	1.0
88	81			18	1.0
89	77	4	18		1.0
93			81	18	1.0
97		18	81		1.0
98			81	18	1.0
99	81	18			1.0
232		5	94		0.998397

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain