SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24706

Length: 1670 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24706

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	actin, putative; K05692 actin beta/gamma 1	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	actin	-	-	99%

Source	InterPros	Term	Type	Identity
Blast2go	Actin-like	IPR004000	-	99%
Blast2go	Actin, conserved site	IPR004001	-	99%
Blast2go	Actin/actin-like conserved site	IPR020902	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNW2

Fln msg:

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

Protein Length: 379

Fln nts: ATGGGTCTCTCAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCGTCTCTATTTCGCGTTTGCAGTTATCTCGCAATTTAATTGAAG_-_ATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGATGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATAGTCACCAACTGGGATGATATGGAGAAGATTTGGCATCATACCTTTTACAATGAGTTACGAGTTGCTCCAGAAGAACACCCTATTCTCCTCACCGAAGCACCTTTGAATCCCAAGGCAAACAGAGAGAAGATGACTCAGATTATGTTTGAGACATTCAATACACCTGCAATGTATGTTGCCATTCAAGCTGTTCTTTCTCTTTATGCAAGTGGTCGAACAACTGGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTTCCCATATATGAAGGATATGCTCTTCCACATGCTATTCTCAGGCTAGATCTTGCTGGTCGGGATCTGACTGATGCTTTGATGAAGATCCTGACTGAAAGAGGTTATTCATTCACCACTACGGCAGAACGTGAAATTGTTCGTGATATGAAAGAGAAACTTGCTTATGTAGCCCTTGACTACGAGCAGGAGCTTGAGACAGCCAAGACGAGTTCCTCCCTGGAAAAGAGTTACGAGCTTCCTGATGGGCAAGTAATCACCATTGGTGCAGAGCGTTTCAGATGCCCCGAGGTCTTGTTCCAACCTTCGCTAATTGGAATGGAAGCTGCTGGCATTCATGAGACAACATACAATTCCATCATGAAGTGTGACGTGGATATCAGAAAGGATCTGTATGGAAATATTGTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAGGGAGATTACTGCCCTGGCCCCAAGTAGTATGAAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTGCCAAGGCTGAGTACGATGAATCTGGTCCGTCAATTGTTCACAGAAAGTGTTTCTAA___TTTTCAGTGGCTTAGTAGTTTTTAGAGTTCCCAAGCAGTATTGCAGTTATTATGAAGTTGAGTAGGTGATCACGGGTATATTATATTCAGCTATTTCGATGCAGTTAGAGTATATAGTCTTGTCATGGTAGAGATGATAGAGGTACATTTTTGCATGGTTGCGTCCTTGTTTGTTGAATGGCAAGATTTTAGCCCGAAATCTGTCGCCCATTTTTTATTTATTTTGTACTGTGTAATAGCGTGCATGGAGGATGCATATTTTGAATCTCTCCAATGTCATAGTGCATGAGAAACGGACGGTCTTACAGTTCATAATGTACTGCTCAATCACCTATTATTATTTTATGGTTTCATGTTTGAATACTATTTTGAACTGTGCGGTTAATATTT

Fln Alignment:

sp_v1.1_unigene24706___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
B8LNW2_______________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYDESGPSIVHRKCF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
377	53	46			1.0
385	90		9		1.0
431	53		46		1.0
615		16		83	0.994512
628	20			80	0.995493
1175		57		42	1.0
1226		80		19	1.0
1258	3			96	0.999943
1312		86		13	1.0
1383	97		2		0.924243
1432			3	96	0.999951
1434		96		3	0.999951
1520		55		44	1.0
1575			54	45	1.0
1577	52		45		1.0
1589	44			55	1.0
1649	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
42	59	AAGGA AAGGA AAGGA AAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain