SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24694

Length: 2213 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24694
CTCGTTGTACCCTATTATTAGGTGAGACCTACCAACACCGCAGAGGATTTTCATCAATCACTGATATTACCGGACAGGATTTGATCTGCGAATTTTTAAAAAGTATTCTGTAACACTGCCTTGGTTATTTCTATAACGTTTTCCTCGCCAGGCCCAGATAATGATGCATAGTCAGCAGGAATCCTCTATCCGAGGTTTGCGTATTAAATCCAAACACTATTACTGTGACATTAACAAGGAGAGAAACGGCCTCTCACTCAATTTGTGTTTGCCAGACGATATTTATGGATTCGCAGCACGTCAATATTTCATTCAAAAAAATCGCCCTAATATAAGACAATCATAACTTTGTTTTTCCTTTGAATTTTACTTCAACCGACGATCTCGACTGCTGAATTCTGAATTCTGCAATTTGATTGCGCGGGGTTAAAAATGGAGAAATTGGCGAAGCTAAACATCTCAGGAGAGGACCTGGAATTCGAATTTAGCCATCTGGAATACCAGAGCGGATTTGGCAACAATTTTTCCTCGGAAGCAAAACCTGGTGCACTGCCGGTAGGGCAGAATAATCCCTTGAAGTGTCCTTATGGTCTCTACGCCGAGCAAATCTCAGGGACGGCATTTACAGTCCCCAGGAAGCTCAACCAGAGAAGTTGGCTGTACCGTATCAAGCCATCAGTAACACATGAACCTTTTCATCCTCGGGTTCCATCACATGATTATCTGATAAGTGAGTTCAATCAGTCATCAAGCTCAGCAACACCAACACAATTGCGTTGGAATCCTTTCAACATTCCAGATACGAAAACAAATTTCATTGATGGACTGTTCACTATATGTGGAGCTGGTAGTTCATTCCTTCGGCATGGCTTTGCAGTGCACATGTATGTCGCAAATGCATCTATGGAAGGCTGTGCATTTGCTAATGCTGATGGGGACTTTTTGATAGTTCCACAACAAGGAAGATTATGGATAACGACAGAGTTAGGAAGATTGCAGGTTTCTCCCGGTGAAATAGTTGTGTTGCAACAAGGTTTCCGGTATTCCATTGATTTACCAGATGGTCCTTCTCGAGGGTACGTTGTAGAGGTTTTCAGTGGCCATTTCCAGCTTCCCGATCTTGGTCCAATTGGTGCAAATGGCCTGGCCTCACCGCCTGACTTTCTAACACCTACAGCATGGTTTGACGACAAAGCCTATCCTGGTTACACGATTGTTCATAAGTTTGGAGGTTCATTGTTTACAGCAAAACAAAATTTCTCCCCCTTCAATGTGGTTGCTTGGCATGGCAATTATGCACCTTACAAGTACGATTTGAAGAAGTTCTGTCCTTTCAATACTGTTTTATTTGATCATGGTGACCCATCAATAAACACAGTTCTGACAGTTCCATCAGAAAAACCAGGAGTAGCTGTGGTTGACTTTGTCATTTTTCCACCTCGCTGGCTGGTAGCAGAACATACCTTCCGTCCTCCATATTACCACCGTAACTGCATGAGTGAATTTATGGGCCTGATTTATGGCAGTTATGAGGCTAAAGCAGATGGATTTCAACCAGGAGGAGCAAGCTTGCACAGCTGCATGACCCCACATGGGCCTGATACTACCACGTTTGAGAAAACTATATCTGAAGAGGGCGATGCAAAACCTGCCAAGATAAAAGATACCATGGCTTTCATGTTTGAGTCATCATTGATTCCCAGAATCACACCATGGGTTCTCAAATCTCCCCATTTAGATAACGATTATTACAAGTGCTGGACAGGTCTCAAGTCCCATTTTCACCATGAACATCTGCCTGAAAACGGGGAATTACATAGTTAGTAAATCTGTTTCTGTATATATGGAGAGATATGTACTAAGATTAGTACCCATCATCAGGTAATTAAGTCTATAGTAAATAGTCTATTACATCATTTTATGTAGAGTTATTGGGTGCCAGAAATGTGCAATGTTAAATAAAATACAACTTTCTGTCCAATGTAAGGGTCCTATAATACACAATATATATTGCTTACCCACATGGGGCATTCTACCTCTTAGCTATTATTGGAAAAATAGCATTTATTGTAGTAAACATGCCTTTTTAAATGGTGAACTTTGTGGCCAAAAGTGTTTACAGAATTGTGTCTTGGTTGCTCTACTTGGCACTACTACCATGACTGTGTGCTGAGATTTGGCTGAAAATAATAATGCAATAAAGTGTTTTGGAG

Ace file of the UniGene sp_v1.1_unigene24694

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homogentisate 1,2-dioxygenase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q9M6U1_SOLLC	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	homogentisate -dioxygenase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Homogentisate 1,2-dioxygenase	IPR005708	-	0.0	83%
Blast2go	Cupin, RmlC-type	IPR011051	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK67

Fln msg:

Fln protein: MEKLAKLNISGEDLEFEFSHLEYQSGFGNNFSSEAKPGALPVGQNNPLKCPYGLYAEQISGTAFTVPRKLNQRSWLYRIKPSVTHEPFHPRVPSHDYLISEFNQSSSSATPTQLRWNPFNIPDTKTNFIDGLFTICGAGSSFLRHGFAVHMYVANASMEGCAFANADGDFLIVPQQGRLWITTELGRLQVSPGEIVVLQQGFRYSIDLPDGPSRGYVVEVFSGHFQLPDLGPIGANGLASPPDFLTPTAWFDDKAYPGYTIVHKFGGSLFTAKQNFSPFNVVAWHGNYAPYKYDLKKFCPFNTVLFDHGDPSINTVLTVPSEKPGVAVVDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFQPGGASLHSCMTPHGPDTTTFEKTISEEGDAKPAKIKDTMAFMFESSLIPRITPWVLKSPHLDNDYYKCWTGLKSHFHHEHLPENGELHS*

Protein Length: 465

Fln nts: CTCGTTGTACCCTATTATTAGGTGAGACCTACCAACACCGCAGAGGATTTTCATCAATCACTGATATTACCGGACAGGATTTGATCTGCGAATTTTTAAAAAGTATTCTGTAACACTGCCTTGGTTATTTCTATAACGTTTTCCTCGCCAGGCCCAGATAATGATGCATAGTCAGCAGGAATCCTCTATCCGAGGTTTGCGTATTAAATCCAAACACTATTACTGTGACATTAACAAGGAGAGAAACGGCCTCTCACTCAATTTGTGTTTGCCAGACGATATTTATGGATTCGCAGCACGTCAATATTTCATTCAAAAAAATCGCCCTAATATAAGACAATCATAACTTTGTTTTTCCTTTGAATTTTACTTCAACCGACGATCTCGACTGCTGAATTCTGAATTCTGCAATTTGATTGCGCGGGGTTAAAA_-_ATGGAGAAATTGGCGAAGCTAAACATCTCAGGAGAGGACCTGGAATTCGAATTTAGCCATCTGGAATACCAGAGCGGATTTGGCAACAATTTTTCCTCGGAAGCAAAACCTGGTGCACTGCCGGTAGGGCAGAATAATCCCTTGAAGTGTCCTTATGGTCTCTACGCCGAGCAAATCTCAGGGACGGCATTTACAGTCCCCAGGAAGCTCAACCAGAGAAGTTGGCTGTACCGTATCAAGCCATCAGTAACACATGAACCTTTTCATCCTCGGGTTCCATCACATGATTATCTGATAAGTGAGTTCAATCAGTCATCAAGCTCAGCAACACCAACACAATTGCGTTGGAATCCTTTCAACATTCCAGATACGAAAACAAATTTCATTGATGGACTGTTCACTATATGTGGAGCTGGTAGTTCATTCCTTCGGCATGGCTTTGCAGTGCACATGTATGTCGCAAATGCATCTATGGAAGGCTGTGCATTTGCTAATGCTGATGGGGACTTTTTGATAGTTCCACAACAAGGAAGATTATGGATAACGACAGAGTTAGGAAGATTGCAGGTTTCTCCCGGTGAAATAGTTGTGTTGCAACAAGGTTTCCGGTATTCCATTGATTTACCAGATGGTCCTTCTCGAGGGTACGTTGTAGAGGTTTTCAGTGGCCATTTCCAGCTTCCCGATCTTGGTCCAATTGGTGCAAATGGCCTGGCCTCACCGCCTGACTTTCTAACACCTACAGCATGGTTTGACGACAAAGCCTATCCTGGTTACACGATTGTTCATAAGTTTGGAGGTTCATTGTTTACAGCAAAACAAAATTTCTCCCCCTTCAATGTGGTTGCTTGGCATGGCAATTATGCACCTTACAAGTACGATTTGAAGAAGTTCTGTCCTTTCAATACTGTTTTATTTGATCATGGTGACCCATCAATAAACACAGTTCTGACAGTTCCATCAGAAAAACCAGGAGTAGCTGTGGTTGACTTTGTCATTTTTCCACCTCGCTGGCTGGTAGCAGAACATACCTTCCGTCCTCCATATTACCACCGTAACTGCATGAGTGAATTTATGGGCCTGATTTATGGCAGTTATGAGGCTAAAGCAGATGGATTTCAACCAGGAGGAGCAAGCTTGCACAGCTGCATGACCCCACATGGGCCTGATACTACCACGTTTGAGAAAACTATATCTGAAGAGGGCGATGCAAAACCTGCCAAGATAAAAGATACCATGGCTTTCATGTTTGAGTCATCATTGATTCCCAGAATCACACCATGGGTTCTCAAATCTCCCCATTTAGATAACGATTATTACAAGTGCTGGACAGGTCTCAAGTCCCATTTTCACCATGAACATCTGCCTGAAAACGGGGAATTACATAGTTAG___TAAATCTGTTTCTGTATATATGGAGAGATATGTACTAAGATTAGTACCCATCATCAGGTAATTAAGTCTATAGTAAATAGTCTATTACATCATTTTATGTAGAGTTATTGGGTGCCAGAAATGTGCAATGTTAAATAAAATACAACTTTCTGTCCAATGTAAGGGTCCTATAATACACAATATATATTGCTTACCCACATGGGGCATTCTACCTCTTAGCTATTATTGGAAAAATAGCATTTATTGTAGTAAACATGCCTTTTTAAATGGTGAACTTTGTGGCCAAAAGTGTTTACAGAATTGTGTCTTGGTTGCTCTACTTGGCACTACTACCATGACTGTGTGCTGAGATTTGGCTGAAAATAATAATGCAATAAAGTGTTTTGGAG

Fln Alignment:

sp_v1.1_unigene24694___MEKLAKLNISGEDLEFEFSHLEYQSGFGNNFSSEAKPGALPVGQNNPLKCPYGLYAEQISGTAFTVPRKLNQRSWLYRIKPSVTHEPFHPRVPSHDYLISEFNQSSSSATPTQLRWNPFNIPDTKTNFIDGLFTICGAGSSFLRHGFAVHMYVANASMEGCAFANADGDFLIVPQQGRLWITTELGRLQVSPGEIVVLQQGFRYSIDLPDGPSRGYVVEVFSGHFQLPDLGPIGANGLASPPDFLTPTAWFDDKAYPGYTIVHKFGGSLFTAKQNFSPFNVVAWHGNYAPYKYDLKKFCPFNTVLFDHGDPSINTVLTVPSEKPGVAVVDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFQPGGASLHSCMTPHGPDTTTFEKTISEEGDAKPAKIKDTMAFMFESSLIPRITPWVLKSPHLDNDYYKCWTGLKSHFHHEHLPENGELHS
B8LK67_______________MEKLAKLNISEEDLESEFSHLGYQSGFGNHFSSEAKPGALPVGQNNPLKCPYGLYAEQVSGTAFTVPRKLNQRSWLYRIKPSVTHEPFHPRVPSHDYLISEFNQSSSSATPTQLRWSPFGIPDTKTNFIDGLFTICGAGSSFLRHGFAVHMYAANASMEGCAFANADGDFLIVPQQGRLWITTELGRLQVSPGEIVVLQQGFRYSIDLPDGPSRGYVVEVFSGHFQLPDLGPIGANGLASPPDFLTPTAWFEDKAYPGYTIVHKFGGSLFTAKQNFSPFNVVAWHGNYAPYKYDLKKFCPFNTVLFDHGDPSINTVLTVPSEKPGVAVVDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGNYEAKADGFQPGGASLHSCMTPHGPDTTTFEKTIAEEDDAKPAKIRDTMAFMFESSLIPRITPWVLKSPHLDNDYYKCWTGLKSHFHHEHLPENGELHS

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
238	66		33		0.997452
239	66			33	0.997452
240		33	66		0.997452
242	66			33	0.997452
247	33	66			1.0
248	33	33		33	0.997753
249		66		33	0.997452
253		66	33		0.997452
256	33			66	0.997452
257		33	66		0.997452
260	33			66	0.997452
686	85			14	0.993533
814	83		16		0.994512
815	83			16	0.994512
816	83	16			0.994512
817			16	83	0.994512
819			16	83	0.994512
821	83	16			0.994512
825	83	16			0.994512
828		16	83		0.994512
832		16	83		0.994512
950	81	18			1.0
952	75			6	1.0
955		6	6	75	0.999931
956	6	75		6	0.999931
960	81			18	1.0
961	81	6			0.999943
1063	90			9	0.999872
1064		19	80		1.0
1067		9	90		0.999872
1068	9		90		0.999872
1086		10		90	1.0
1090	90	6			0.997952
1091	6	3	89		0.998304
1092	89	6		3	0.998304
1093		6	86	6	0.995852
1094	3	10	86		1.0
1095	6			93	0.999453
1460		9	90		0.999842
1461	90		9		0.999842
1462	90			9	0.999842
1464	90		9		0.999842
1472		90		9	0.999842
1479	9	90			0.999842
1552	94		5		0.997984
1819	16		83		0.994512
1905	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain