SustainPineDB

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Assembly info
Unigenes
SNPs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24692

Length: 426 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene24692
GAGAGGAGGTGTCAAGCGTATCAGTGGGCTCATCTACGAGGAGACCAGAGGCGTTTTGAGATCTTCTTGGAGAATGTGATCAGAGATGCCGTGACATACACAGAGCACGCCCGGAGAAAGACCGTGACGGCAATGGATGTTGTCTACTCCCTAAAGAGGCAGGGCCGAACCCTTTACGGCTTCGGGGGCTGAGGAGTTTCGATTCGTGTCTCTGGTTTTTGATCATTTCTTTATCAATGGTGTCTGTTGACACCACCCTTTTTTATTTGGGAATGTTAACCTTGATGATTCCTTCTATGTATTGAACAGATTGTGGTGTCTTCTTTAATTGAATTAATCGGATTGCCAGTCATTTTTTGTAGCAGGGATGTTTTAAGCTTTTACTGCTGAAAGTTGCTTGTATTTCGTAGCCTGAAAATTGTAGTC

Ace file of the UniGene sp_v1.1_unigene24692 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H4 n=1 Tax=Zea mays RepID=B6TJ90_MAIZE	-	-	1.0e-22	95%
FL-Next	sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	histone h4	-	-	9.93315e-23	100%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H4	IPR001951	-	9.93315e-23	100%
Blast2go	Histone core	IPR007125	-	9.93315e-23	100%
Blast2go	Histone-fold	IPR009072	-	9.93315e-23	100%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLQ1

Fln msg: Overlapping hits, possible frame ERROR between 61 and 58, your sequence is shorter than subject: 64 - 103

Fln protein: RGGVKRISGLIYEETRGVxxxFLENVIRDAVTYTEHARRKTVTAMDVVYSLKRQGRTLYGFGG*

Protein Length: 65

Fln nts: GAGAGGAGGTGTCAAGCGTATCAGTGGGCTCATCTACGAGGAGACCAGAGGCGTTxxxxxxxxxTTCTTGGAGAATGTGATCAGAGATGCCGTGACATACACAGAGCACGCCCGGAGAAAGACCGTGACGGCAATGGATGTTGTCTACTCCCTAAAGAGGCAGGGCCGAACCCTTTACGGCTTCGGGGGCTGAGGAGTTTCGATTCGTGTCTCTGGTTTTTGATCATTTCTTTATCAATGGTGTCTGTTGACACCACCCTTTTTTATTTGGGAATGTTAACCTTGATGATTCCTTCTATGTATTGAACAGATTGTGGTGTCTTCTTTAATTGAATTAATCGGATTGCCAGTCATTTTTTGTAGCAGGGATGTTTTAAGCTTTTACTGCTGAAAGTTGCTTGTATTTCGTAGCCTGAAAATTGTAGTC

Fln Alignment:

sp_v1.1_unigene24692___RGGVKRISGLIYEETRGVLxIFLENVIRDAVTYTEHARRKTVTAMDVVYSLKRQGRTLYGFGG
A9NLQ1_______________RGGVKRISGLIYEETRGVLxIFLENVIRDAVTYTEHARRKTVTAMDVVYSLKRQGRTLYGFGG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
274		66		33	1.0
299	11		88		0.923564
304	12		87		0.992554
315			42	28	1.0
369		33		66	0.997452
370		66		33	0.997452
371	66	33			0.997452
372	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain