SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24662

Length: 1786 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24662

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	polyubiquitin	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	98%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	98%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	98%
Blast2go	aging	GO:0007568	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	vacuole	GO:0005773	Cellular Component	98%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	98%
Blast2go	Ubiquitin conserved site	IPR019954	-	98%
Blast2go	Ubiquitin supergroup	IPR019955	-	98%
Blast2go	Ubiquitin subgroup	IPR019956	-	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: warning!, putative chimeric sequence! or repetitive structure

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF*

Protein Length: 460

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACGTCGAATAATTTGTCTTCTACAGGTCTTCCTCAGTAGTTTTATTCCGGCTTCAAG_-_ATGCAGATCTTTGTTAAAACCCTTACCGGCAAGACCATTACTCTCGAGGTTGAGAGCTCTGACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGTCTGATATTTGCCGGAAAACAACTGGAAGACGGCCGTACCCTTGCCGATTACAACATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACGATAACGTTGGAAGTGGAGAGCTCAGATACCATCGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATTCCGCCGGACCAGCAGCGTCTGATATTTGCCGGAAAACAGCTCGAAGACGGCCGAACCTTGGCAGACTACAATATTCAGAAGGAATCTACCCTGCACCTTGTCCTCCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAAACCCTCACTGGCAAGACAATTACTCTAGAAGTTGAGAGCTCGGACACCATTGATAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGTCTTATCTTCGCCGGAAAACAGCTCGAAGACGGCCGAACCTTGGCAGATTACAATATTCAGAAGGAGTCGACTCTGCACCTCGTCCTCCGTTTGAGGGGTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCCCCCTGACCAGCAGCGTCTGATCTTTGCCGGAAAACAACTTGAAGACGGGCGAACGCTTGCTGATTACAATATACAAAAGGAATCTACTCTGCATCTCGTCCTCCGTCTAAGGGGTGGCATGCAGATTTTTGTCAAAACCCTTACTGGAAAGACAATCACCTTAGAGGTTGAGAGCTCAGACACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGACCAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGATGGACGGACATTAGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGAGGCATGCAGATCTTTGTGAAAACTCTTACGGGAAAAACCATTACTTTGGAGGTGGAGAGCTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTGGCTGATTATAACATCCAGAAAGAGTCGACTCTGCACCTGGTGCTCCGACTTCGTGGTGGTAGTTTTTAA___TTTAAAGGTCTTTTTGGAATAGCTTCGCAGGGTTTCCGTAAAAGATGTTTCTGTATGCGTTTGTTAGTTTTTGATTTTCTGTTGTGGGATCCGTGATGTTTTTTATCCGTGCACAGTAGAACGAAACCAACGTTGATGTCCTGGTTGGTACTGCAGTGGGTACTATGCAAGTAAATAATTCTCTTTGGATACAAAGACACTACCATATGCATATTTTTTTTTAAAGATGAAGATTTCGAACGCATCTGTTATTGAAGTATTTCCACCAGTGGGAGAATTTTTAAGAAAGTAGATTATTATCGTTTCTAACTTAAAATGTAGAACGTTG

Fln Alignment:

sp_v1.1_unigene24662___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKARSRTKKAPPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF
C0PSZ6_______________MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
620	25		5		1.0
714		11		88	0.923564
732	14		85		0.993533
735			85	14	0.993533
738		14		85	0.993533
747		80		20	0.995493
984	25	75			0.996473
986	75		25		0.996473
987	75		25		0.996473
1109		75		25	0.996473
1110			25	75	0.996473
1174	88			11	0.923564
1175	88	11			0.923564
1176	11			88	0.923564
1530		33		66	0.997452
1569		33		66	1.0
1570			66	33	0.997452
1657	12		87		0.992554
1659	12	87			0.992554
1661	12	87			0.992554
1662		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain