SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24655

Length: 712 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24655

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Disease resistance protein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C784_ARATH	-	-	2.0e-14	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	9.42634e-20	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	9.42634e-20	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	9.42634e-20	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure your sequence is shorter than subject: 141 - 1071

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: TALQTLNLKYCTSLQGLPDSVGQLTGLQSLNLQECTSLQGLPDSVGNLTRLKWLYLSGCSxxxxxxxFRHLSSLEELDLSGCSNLQMPPNVQHLSSLVKLYVSHCSKLQWGAGVVESRAIDWEMASSKEGRKVGRRRRKQ*

Protein Length: 142

Fln nts: ACGGCCCTCCAGACACTCAACTTGAAATACTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAGCCTCAACTTGCAAGAGTGCACCAGCCTGCAGGGGCTCCCAGACTCAGTTGGGAACTTAACGAGACTCAAATGGCTTTACTTGTCCGGGTGTTCCxxxxxxxxxxxxxxxxxxxxxTTTCGGCATTTGAGTTCGTTGGAGGAGCTTGACTTGTCTGGATGTTCCAATTTACAGATGCCGCCCAATGTTCAGCATTTGAGCTCGCTGGTGAAGCTTTATGTGTCTCACTGTTCAAAACTGCAATGGGGTGCTGGAGTAGTCGAGTCCCGCGCCATCGACTGGGAAATGGCTTCATCGAAGGAAGGAAGGAAGGTGGGAAGAAGGCGGCGAAAACAGTGATGAATAAAAAGCTGCAACGAGTTGTATAATATAAGAGAACTTCTTAAGATCAGATGGCCACGGTGCTCGCCACACCCCGCAAAGAGAGCTGTGTCATTAATCTTCATAGAGCTGTAATCACAGGCAAAATGAATTACACAATGTACAGAATGCTCTACATTTTACATCATGTGAAGTAAAATATACTAAATGAATTACACAATGTACAGAATGCTCTACATTTTACATCATGTGAAGTAAAATATACTAGTGCAAAATATGTTGCCATAATAACATTTGAGTTTACGCTG

Fln Alignment:

sp_v1.1_unigene24655___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C0PQE2_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
264		80		20	0.995493
284	80	20			0.995493
288		80		20	0.995493
296	80		20		0.995493
319	75	25			0.996473
345		25		75	0.996473
367	25		75		0.996473
424	60		40		1.0
498		87		12	0.992554
562		14	85		0.993533
573		50	50		1.0
599	25		16	58	1.0
630		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
380	396	GAAG GAAG GAAG GAAG G	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain