SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24654

Length: 798 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24654

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar ATP synthase subunit ac39, putative (EC:3.6.3.14); K02146 V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.14]	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	vacuolar atp synthase subunit	-	-	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	86%

Source	KEGGs	Term	Identity
AutoFact	Oxidative phosphorylation	00190	86%
AutoFact	Photosynthesis	00195	86%
AutoFact	Methane metabolism	00680	86%
AutoFact	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	92%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
433		27	72		1.0
436		18		81	0.999994
437		9	18	72	0.999994
445	9	72	18		0.999994
446	81	18			0.999994
448			18	81	0.999994
451	81	18			0.999994
455	81			18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain