SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24616

Length: 1716 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24616

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to transaldolase ToTAL2; K00616 transaldolase [EC:2.2.1.2]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	transaldolase-like protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transaldolase.	EC:2.2.1.2	-	0.0	70%

Source	KEGGs	Term	Identity
AutoFact	Pentose phosphate pathway	00030	70%
AutoFact	Biosynthesis of phenylpropanoids	01061	70%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	70%
AutoFact	Biosynthesis of plant hormones	01070	70%
AutoFact	Metabolic pathways	01100	70%
AutoFact	Biosynthesis of secondary metabolites	01110	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transaldolase	IPR001585	-	0.0	86%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P023

Fln msg:

Fln protein: MAIRMQMSISMPTRLHHFQFQNSRGVRKANLLCSASSSFSSSSSLNTAHQNTELEAIKELSEIVPDTMIFDDFERFPPTAATVSSSLLLGICSLPETRFGSVIENAMVDSEGYASEEGSDRLSCIFNKAMVNVGAELAKVVPGRVSTEVDARLAYDTHGTIKKVHELLKLYEEVEVPQERLLFKIPATWQGIEASRLLEAEGIQTHVTFVYSFPQAAAAAQAGSSVIQIFVGRVRDWARNHSGDPEIESALSSGEDPGIALATKAFNYIHKHGHKSKLMAAAIRNKQDLFSLLGIDYIIVPLKILESLKDSKTLPDDKYSFIRRLSPNTAQAYNFTSEELVKWDQATFASAIGPAAEELLAAGLEGYINQSKRVEAYLTKIWPPPNV*

Protein Length: 389

Fln nts: CGTCGTGGCGTTGGCTTTCAGTTTGGGGATGGTTTTCATTACTTCATCGAATAAGCGAACCGTTGATCGAAATATCAAATAAGAGCGTGATGATTTCTAGGAAATGTATGTCGATATTTGGATTTGAGATGCTCTTCATTACTCTATAGAACAGAAGGGTAGTGGATAGTGGGTACGCGCAAATCC_-_ATGGCGATTAGAATGCAGATGTCCATTTCCATGCCTACCAGGCTTCATCATTTCCAGTTCCAGAATTCAAGAGGGGTGCGAAAAGCAAATTTGTTATGTAGCGCCTCCTCTTCCTTCTCTTCGTCATCATCACTGAACACAGCCCATCAGAACACAGAGCTGGAGGCGATCAAGGAGTTGAGTGAGATTGTGCCGGACACTATGATTTTCGATGACTTTGAAAGGTTTCCACCAACAGCAGCTACTGTCAGCTCCTCCCTCCTCCTTGGCATCTGCAGCCTTCCCGAGACCAGATTTGGGAGCGTGATAGAAAATGCAATGGTTGATAGTGAAGGCTATGCCAGTGAAGAAGGCAGTGATCGGTTGTCGTGTATCTTTAACAAGGCTATGGTGAATGTTGGAGCTGAATTGGCAAAAGTTGTACCGGGGCGAGTATCTACAGAAGTAGATGCTCGCTTAGCCTACGACACTCATGGAACCATAAAAAAGGTCCATGAACTTTTGAAATTGTATGAGGAGGTGGAGGTACCTCAGGAGCGTCTACTATTCAAAATTCCTGCAACTTGGCAAGGAATTGAAGCATCAAGACTGCTGGAAGCCGAAGGCATCCAAACTCATGTAACGTTTGTCTACAGCTTTCCTCAAGCAGCAGCTGCAGCTCAAGCAGGCTCATCTGTCATACAAATTTTTGTTGGTCGTGTCAGGGATTGGGCTCGTAACCATTCTGGTGATCCAGAGATAGAAAGTGCCCTTTCAAGTGGAGAAGATCCTGGAATAGCTTTGGCAACTAAGGCCTTCAATTACATCCATAAGCATGGTCACAAGTCCAAACTTATGGCAGCTGCAATTCGGAACAAGCAAGATCTCTTCAGCCTTCTTGGGATTGACTACATCATTGTACCACTGAAAATATTAGAGTCACTTAAAGATTCGAAGACACTTCCAGATGACAAATATTCCTTTATAAGGCGACTATCTCCGAATACAGCACAGGCATACAACTTTACTTCTGAAGAGCTAGTAAAATGGGATCAAGCCACATTTGCATCAGCCATAGGTCCTGCAGCTGAAGAGCTTTTAGCTGCTGGCTTGGAGGGCTACATCAATCAAAGCAAGCGTGTGGAAGCATATTTAACCAAGATCTGGCCACCACCAAATGTTTGA___TTCTGCTTTGTTGAATTTTCTGCTAATGAATTTGATACCAGAGTTAGTATGCATATTATGTAGGCTGTAATTAACAAATTTTAACAGGGATAAAATTTGAATCAAACATCCTTCTTAGATTGTCTTACTGTAGAAGGAATTGTTTAAAAAACTCCAGTTGTTTTGCTTGTAATTATTAGTTTTCTGTTTGATTTTTCTCTGTTGAATTGATATGAAATTGCGGCTAATGAATTGGATACTAGATGTGGTATGCATATTTCGTAGGCTGTAATGAACAAATTTTAACAGGGACACAAATTTTGAACCAAACATCCTTTTTAGATCGTATTGCTGTAAAAGGAATTGTTAAACAAAGTTCAATCAGAA

Fln Alignment:

sp_v1.1_unigene24616___MAIRMQMSISMPTRLHHFQFQNSRGVRKANLLCXXXXXXXXXXXLNTAHQNTELEAIKELSEIVPDTMIFDDFERFPPTAATVSSSLLLGICSLPETRFGSVIENAMVDSEGYASEEGSDRLSCIFNKAMVNVGAELAKVVPGRVSTEVDARLAYDTHGTIKKVHELLKLYEEVEVPQERLLFKIPATWQGIEASRLLEAEGIQTHVTFVYSFPXXXXXXXXGSSVIQIFVGRVRDWARNHSGDPEIESALSSGEDPGIALATKAFNYIHKHGHKSKLMAAAIRNKQDLFSLLGIDYIIVPLKILESLKDSKTLPDDKYSFIRRLSPNTAQAYNFTSEELVKWDQATFASXXXXXXXXXXXXXXXXYINQSKRVEAYLTKIWPPPNV
A9P023_______________MAISMQMSISMPTRLHHFQFQKPRGVQRANWLCGASASFSSSSSLSTDHQNTEMEAIKELSEIVPDTMIFDDFERFPPTAATVSSSLLLGICSLPETRFGSVIETAMVDSEGYASEDGSDRLSCIFNKAMVNVGAELVKIVPGRVSTEVDARLAYDTHGTIKKVHELLKLYEEVEVPQERLLFKIPATWQGIEASRLLEAEGIQTHVTFVYSFPQAAAAAQAGSSVIQIFVGRVRDWARNHSGDQEIESALARGEDPGIALATKAFNYIHKHGHKSKLVAAAIRNKQDIFSLLGIDYIIVPLKILQSLKDSKTLPDDKYSFVRRLSPNAAQAYNFTAEELVKWDQATFASAIGPAAEELLAAGLEGYINQSKRVEAYFTKIWPPPNV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
542			10	90	0.90298
562		11		88	0.923564
1633	42			57	1.0
1635	42	42	14		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain