SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24607

Length: 1074 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24607

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosome biogenesis protein nop10, putative; K11130 H/ACA ribonucleoprotein complex subunit 3	-	-	5.0e-23	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	h aca ribonucleoprotein complex subunit 3-like protein	-	-	4.72704e-30	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	polar nucleus fusion	GO:0010197	Biological Process	4.72704e-30	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	4.72704e-30	86%
Blast2go	Cajal body	GO:0015030	Cellular Component	4.72704e-30	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	H/ACA ribonucleoprotein complex, subunit Nop10	IPR007264	-	4.72704e-30	86%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
180	40		60		1.0
182	80	20			0.995493
190		80		20	0.995493
243	80		20		0.995493
308	87			12	0.992554
310		87	12		0.992554
311	87		12		0.992554
312		12	87		0.992554
320	12			87	0.992554
447	80			20	0.995493
463		80		20	0.995493
576		97		2	0.97849
578	97			2	0.979771
683	87			8	0.999414
684		65		4	1.0
685		91	8		0.999766
689		91		8	0.999766
690			8	91	0.999766
692			8	91	0.999766
698	91		8		0.999766
699			8	91	0.999766
700		8		91	0.999766
701		8	91		0.999766
935		10		90	0.90298
952		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
943	954	ATT ATT ATT ATT	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain