SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24579

Length: 2061 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24579
CGTCGTGACCTTGGCTGTCACTCAGCTTTTACGTAAAGGTCTGCAGCGGAACCGCTGATTTCTTTCCGGCATTCTTCTTCTTTTTCCTAAATTCCAGCTTTTCCTATATAAGGACCCGTCGTGACCTTGGCTGTCACTCAGTGTTTGAACATTCTGGTGTACGCTGAAGAAGCGAATTTAGTGCCAAAAAAGACTCTGTGCGGAGGCCTTTGAAAGTTCCTGGCGTTTCTCGAGCTTTCCGCCAGTGCCTTTCTTGTGTCTTATTTGGAGGATTTTGCCAGTTTAGAGACAAGATTTGACAAATTCGTGTGAATAAGTCGTCCTCGAGATAAATTTTACGTAATTCAGACCTTCTGTCGGTTATTCGAGGGGGATTTCATCGGATTGACCCGAAAATTTTGTAAAGTCAAATTGAGAAGGGCTCTGTTTTAGGCACAGGTTTTCCTTTTCTGTCTTCCTGTGTTTTGAAGCGATGTCGCTGGTGCTGTTCCGTAATGTTAAATGATAATATGTCCTGCTCCTCTGTTGGCGATTCCTGAGGCTTGAAATCGAGCTCTCGGGCTGTGCCATGGCTCATTCGGCGAAACAAAACAATGATGGAACGCCGGTCACGGTAGAGTCTCACCGATCTGTGCCGGCTCCGTTTCTCATTAAGACATATCAGCTGGTGGATGATTCGAACACGGATGATATAATTTCATGGAATGAAGCGGGTACAACGTTTATTGTTTGGCGGCCTGCAGAATTCGCCAGAGATTTATTGCCGAATTACTTCAAGCACAACAATTTCTCAAGTTTTGTTCGCCAACTAAATACATATGGCTTTCGGAAGATTGTACCAGACAGATGGGAGTTCTCAAATGAGTTTTTTCGCAAGGGGGAAAAGCAGCTACTTTCTGAAATACACAGAAGAAAAGGTCTAATACAACCTCCTCCACCACCTGAGAACAGATCTATTTCACCATCTAACTCTGGTGATGAGCAAACGTGGTCTTCCACCTCCTCTCCTAACTCTTCCACGGGGGTGGATGCTCTTAGCCATAAGAATGCAATTGAAGAAAATGAGAAACTGAGAAAGGAAAATCTGTTATTGGTATCTGAGCTGACACAAATGAAGAAGCTCCACAGCCAGCTTTTGCTCTTCTTATCCAGGCATGTAAATATCACATCAGCAGATCATGTTGCCAATTTTCTGTCCCAAAATGTTGGTCCTTCTGAAGGGTTGTCAATGTTGGCACGGTTAAAAGATTATTTGGAACAATATGGAGGAGAGGAGATTTCAAGAGATTTTCCTGGTAGCTCCTTGAGCTCGGGAGTTTCTGTGGCAAATGATGACCCTTTTGTTTCAGGCTCGGCAAAAGAAAGCATGGCCTCAAAGAGGCCACCTTTTGTAGATGGTGCATGTAGAGAAGTAGGTAGGAAAAGTTACATTTCTGTAAAGATAGAAGATGATGACGAGAAAGGAAACCCCAAGCTGTTTGGCGTACCTCTGCTTCCTAGCAAAAGACCCCTTCCAGGATCTAACGATAATGGGCAACCTGAACCGATGATTCGCAAAATTGGAAGGTGTGCCAACTGATTTCACTCCCACAAGGGAGGGTTTATCTTTGTTTTGAACTACGCTCTCTGTTTTTTCTGTAGCCAAAATGGTTGCAGCTGAAGAAAATTACATCTCCGGGAAAATGCCTGCTGTAAGGACTTAAACCTATCGTTTTATATTTATATGGTGATCTTTACTATATGTTAACGGTCAATCTATGTTGATCTTATATCTATATATATGTTTCTGGCCAATTTTTGTCAAGAATTCCAGGGCATGAATGCTTCTTATGAGAGCATTGCGCTTCTTGTAACAGCTGTAAATTTTTTGAATTCTGAATCACCTCATGAAACAAATTGTGGTGTAATTAAACTATAGATGTGAAACATCATTTCATTTTATGTGGTATACATGCCAAAGTCTGACATGGGATTTGGAGATATAAAATTGAGGTTCTTCTTACCAGAGCTTGAATCACAAAAGCAGAATTCCAGATTAGTAAAGAAAAAAAAAAAAAAAAA

Ace file of the UniGene sp_v1.1_unigene24579

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative	-	-	8.40779e-45	77%
FL-Next	sp=Heat stress transcription factor B-4d; Oryza sativa subsp. japonica (Rice).	-	-	0.0	68%
Blast2go	heat shock transcription factor	-	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q10KX8

Fln msg: your sequence is longer than subject: 337 - 305

Fln protein: MAHSAKQNNDGTPVTVESHRSVPAPFLIKTYQLVDDSNTDDIISWNEAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFSNEFFRKGEKQLLSEIHRRKGLIQPPPPPENRSISPSNSGDEQTWSSTSSPNSSTGVDALSHKNAIEENEKLRKENLLLVSELTQMKKLHSQLLLFLSRHVNITSADHVANFLSQNVGPSEGLSMLARLKDYLEQYGGEEISRDFPGSSLSSGVSVANDDPFVSGSAKESMASKRPPFVDGACREVGRKSYISVKIEDDDEKGNPKLFGVPLLPSKRPLPGSNDNGQPEPMIRKIGRCAN*

Protein Length: 338

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTACGTAAAGGTCTGCAGCGGAACCGCTGATTTCTTTCCGGCATTCTTCTTCTTTTTCCTAAATTCCAGCTTTTCCTATATAAGGACCCGTCGTGACCTTGGCTGTCACTCAGTGTTTGAACATTCTGGTGTACGCTGAAGAAGCGAATTTAGTGCCAAAAAAGACTCTGTGCGGAGGCCTTTGAAAGTTCCTGGCGTTTCTCGAGCTTTCCGCCAGTGCCTTTCTTGTGTCTTATTTGGAGGATTTTGCCAGTTTAGAGACAAGATTTGACAAATTCGTGTGAATAAGTCGTCCTCGAGATAAATTTTACGTAATTCAGACCTTCTGTCGGTTATTCGAGGGGGATTTCATCGGATTGACCCGAAAATTTTGTAAAGTCAAATTGAGAAGGGCTCTGTTTTAGGCACAGGTTTTCCTTTTCTGTCTTCCTGTGTTTTGAAGCGATGTCGCTGGTGCTGTTCCGTAATGTTAAATGATAATATGTCCTGCTCCTCTGTTGGCGATTCCTGAGGCTTGAAATCGAGCTCTCGGGCTGTGCC_-_ATGGCTCATTCGGCGAAACAAAACAATGATGGAACGCCGGTCACGGTAGAGTCTCACCGATCTGTGCCGGCTCCGTTTCTCATTAAGACATATCAGCTGGTGGATGATTCGAACACGGATGATATAATTTCATGGAATGAAGCGGGTACAACGTTTATTGTTTGGCGGCCTGCAGAATTCGCCAGAGATTTATTGCCGAATTACTTCAAGCACAACAATTTCTCAAGTTTTGTTCGCCAACTAAATACATATGGCTTTCGGAAGATTGTACCAGACAGATGGGAGTTCTCAAATGAGTTTTTTCGCAAGGGGGAAAAGCAGCTACTTTCTGAAATACACAGAAGAAAAGGTCTAATACAACCTCCTCCACCACCTGAGAACAGATCTATTTCACCATCTAACTCTGGTGATGAGCAAACGTGGTCTTCCACCTCCTCTCCTAACTCTTCCACGGGGGTGGATGCTCTTAGCCATAAGAATGCAATTGAAGAAAATGAGAAACTGAGAAAGGAAAATCTGTTATTGGTATCTGAGCTGACACAAATGAAGAAGCTCCACAGCCAGCTTTTGCTCTTCTTATCCAGGCATGTAAATATCACATCAGCAGATCATGTTGCCAATTTTCTGTCCCAAAATGTTGGTCCTTCTGAAGGGTTGTCAATGTTGGCACGGTTAAAAGATTATTTGGAACAATATGGAGGAGAGGAGATTTCAAGAGATTTTCCTGGTAGCTCCTTGAGCTCGGGAGTTTCTGTGGCAAATGATGACCCTTTTGTTTCAGGCTCGGCAAAAGAAAGCATGGCCTCAAAGAGGCCACCTTTTGTAGATGGTGCATGTAGAGAAGTAGGTAGGAAAAGTTACATTTCTGTAAAGATAGAAGATGATGACGAGAAAGGAAACCCCAAGCTGTTTGGCGTACCTCTGCTTCCTAGCAAAAGACCCCTTCCAGGATCTAACGATAATGGGCAACCTGAACCGATGATTCGCAAAATTGGAAGGTGTGCCAACTGA___TTTCACTCCCACAAGGGAGGGTTTATCTTTGTTTTGAACTACGCTCTCTGTTTTTTCTGTAGCCAAAATGGTTGCAGCTGAAGAAAATTACATCTCCGGGAAAATGCCTGCTGTAAGGACTTAAACCTATCGTTTTATATTTATATGGTGATCTTTACTATATGTTAACGGTCAATCTATGTTGATCTTATATCTATATATATGTTTCTGGCCAATTTTTGTCAAGAATTCCAGGGCATGAATGCTTCTTATGAGAGCATTGCGCTTCTTGTAACAGCTGTAAATTTTTTGAATTCTGAATCACCTCATGAAACAAATTGTGGTGTAATTAAACTATAGATGTGAAACATCATTTCATTTTATGTGGTATACATGCCAAAGTCTGACATGGGATTTGGAGATATAAAATTGAGGTTCTTCTTACCAGAGCTTGAATCACAAAAGCAGAATTCCAGATTAGTAAAGAAAAAAAAAAAAAAAAA

Fln Alignment:

sp_v1.1_unigene24579___IELSGCAMAHSAKQNNDGTPVTVESHRSVPAPFLIKTYQLVDDSNTDDIISWNEAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFSNEFFRKGEKQLLSEIHRRK
Q10KX8_______________VERCGGEMVVSMERSHGRSTTTAAAVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRK

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
118		33	66		0.997452
119	33			66	0.997452
120	33	66			0.997452
122	33			66	0.997452
123	33		66		0.997452
125		66	33		0.997452
126		66	33		0.997452
133	33	66			0.997452
134	33			66	0.997452
138	66			33	0.997452
142	66			33	0.997452
500		16		83	0.994512
501			16	83	0.994512
502	83	16			0.994512
504	83		16		0.994512
509	83		16		0.994512
511		16		83	0.994512
515			16	83	0.994512
528	11			88	0.923564
532		90	10		0.90298
1147			16	83	0.994512
1148		16		83	0.994512
1150			16	83	0.994512
1151		83		16	0.994512
1152		83	16		0.994512
1158			12	87	0.992554
1160		12		87	0.992554
1161	87	12			0.992554
1565			87	12	0.999964
1568		12	87		0.999964
1592	89		10		0.999919
1602		11	88		0.999937
1637		28		64	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain